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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB254
Library SS
(Link to library)
Clone ID SSB254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04520-1
Original site URL
Representative seq. ID SSB254F
(Link to Original site)
Representative DNA sequence 
>SSB254 (SSB254Q) /CSM/SS/SSB2-C/SSB254Q.Seq.d/
TATTGTTTTTCATTCATTTTTCGATTTCTTTTTTTTAAAACTCATTCAAAATTTTATATA
ATATAATTTAAATAAATATGTTAAATTCAGTCGGAGGTAGTGTCGCCACTAAAGTTGGTG
CTTCATTTTTACCAGAGAGTTCTCTCTTAAAAACAATTGCAAAATATGCAGCTTGGGCTA
CTGGTGCCTTACTTGTTTTATTAGGTGGTATTTCAATTTTTGATTCACATTGGATTATTG
GACCAATTTGTATAGCATTAGGTGGTGTTATGCTTGTTATTGAATTTGCAGTACCATTCG
CTGCTCAATTCCAATTATTTTTXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
lffihfsisff*nsfkilynii*INMLNSVGGSVATKVGASFLPESSLLKTIAKYAAWAT
GALLVLLGGISIFDSHWIIGPICIALGGVMLVIEFAVPFAAQFQLF---
Translated Amino Acid sequence (All Frames) 
Frame A:
ycfsfifrflffkthskfyii*fk*ic*iqsevvsplklvlhfyqrvls*kqlqnmqlgl
lvpylfy*vvfqflihiglldqfv*h*vvlclllnlqyhsllnsnyf---


Frame B:
ivfhsffdffflkliqnfi*ynlnkyvkfsrr*crh*swcfiftrefslknnckicslgy
wcltcfirwyfnf*ftldywtnlysirwcyacy*icstircsipii---


Frame C:
lffihfsisff*nsfkilynii*INMLNSVGGSVATKVGASFLPESSLLKTIAKYAAWAT
GALLVLLGGISIFDSHWIIGPICIALGGVMLVIEFAVPFAAQFQLF---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK416 (VSK416Q) /CSM/VS/VSK4-A/VSK416Q.Seq.d/                        567   e-161
SSB254 (SSB254Q) /CSM/SS/SSB2-C/SSB254Q.Seq.d/                        567   e-161
SSD790 (SSD790Q) /CSM/SS/SSD7-D/SSD790Q.Seq.d/                        545   e-154
VSJ471 (VSJ471Q) /CSM/VS/VSJ4-C/VSJ471Q.Seq.d/                        527   e-149
SSC616 (SSC616Q) /CSM/SS/SSC6-A/SSC616Q.Seq.d/                        303   9e-82
CHK111 (CHK111Q) /CSM/CH/CHK1-A/CHK111Q.Seq.d/                         62   6e-09
AFA491 (AFA491Q) /CSM/AF/AFA4-D/AFA491Q.Seq.d/                         46   3e-04
SSA645 (SSA645Q) /CSM/SS/SSA6-B/SSA645Q.Seq.d/                         44   0.001
FC-IC1359 (FC-IC1359Q) /CSM/FC-IC/FC-IC1359Q.Seq.d/                    44   0.001
VSH887 (VSH887Q) /CSM/VS/VSH8-D/VSH887Q.Seq.d/                         38   0.081
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    62  4e-06  6
BZ696793|BZ696793.1 SP__Ba0087L23.r SP__Ba Sorghum propinquum genomic clone SP__Ba0087L23 3', genomic survey sequence.    50  0.017  1
AL954744|AL954744.8 Zebrafish DNA sequence from clone DKEY-119M7 in linkage group 20.    48  0.066  1
BX511077|BX511077.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-241J12.    48  0.066  1
AC016914|AC016914.5 Homo sapiens chromosome 14 clone RP11-502F23, WORKING DRAFT SEQUENCE, 16 unordered pieces.    46  0.26  1
AC144591|AC144591.7 Medicago truncatula clone mth2-5f17, complete sequence.    46  0.26  1
AL935027|AL935027.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-171D6.    46  0.26  1
BX322631|BX322631.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.26  1
BX119908|BX119908.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225A3.    46  0.26  1
M11449|M11449.1 Yeast mitochondrial ori2-ori7 region DNA with putative peptide.    46  0.26  1
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001019_1479(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    33   4.0
CP001020_496(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com...    33   4.0
EU545988_1(EU545988|pid:none) Zika virus polyprotein gene, compl...    32   5.3
AY632535_1(AY632535|pid:none) Zika virus strain MR 766, complete...    32   5.3
AE014298_112(AE014298|pid:none) Drosophila melanogaster chromoso...    32   6.9
AP006840_1512(AP006840|pid:none) Symbiobacterium thermophilum IA...    32   9.0
protein update 2009. 6. 8
PSORT 

 psg: 0.87  gvh: 0.56  alm: 0.23  top: 0.43  tms: 0.13  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSB254 is end
5' end seq. ID SSB254F
5' end seq. 
>SSB254F.Seq
TATTGTTTTTCATTCATTTTTCGATTTCTTTTTTTTAAAACTCATTCAAAATTTTATATA
ATATAATTTAAATAAATATGTTAAATTCAGTCGGAGGTAGTGTCGCCACTAAAGTTGGTG
CTTCATTTTTACCAGAGAGTTCTCTCTTAAAAACAATTGCAAAATATGCAGCTTGGGCTA
CTGGTGCCTTACTTGTTTTATTAGGTGGTATTTCAATTTTTGATTCACATTGGATTATTG
GACCAATTTGTATAGCATTAGGTGGTGTTATGCTTGTTATTGAATTTGCAGTACCATTCG
CTGCTCAATTCCAATTATTTTT----------
Length of 5' end seq. 322
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -