>SSB253 (SSB253Q) /CSM/SS/SSB2-C/SSB253Q.Seq.d/
GAATGGGTCATGGAAAATATTTATTTAATAAGGTGGTAAAATTAAATATTGACTAATTCT
ANCTCTAGTTTGTTCAATATTTAATTTTACCACCTTATCAAAGAATGGNTCANGGNAAAT
ANTTATTTAATTCAATTTAGCACTATTACAAAACANTTNATGGNTTTTATNGACCAATTT
ATNNTATTANAANTGANNATNCATCTGATGNCATTTAAGTTATTAAGATTTXXXXXXXXX
X

ewvmeniylirw*n*iltnsxsslfni*FYHLIKEWXXXNXYLIQFSTITKXXMXFXDQF
XXLXXXXHLMXFKLLR---

Frame A:
ewvmeniylirw*n*iltnsxsslfni*FYHLIKEWXXXNXYLIQFSTITKXXMXFXDQF
XXLXXXXHLMXFKLLR---


Frame B:
ngswkifi**ggkiky*lilxlvcsifnfttlskngsxxixi*fnlallqnxxwxlxtnl
xyxx*xxi*xhlsy*d---


Frame C:
mghgkylfnkvvklnid*fxl*fvqylilppyqrmxxgkxlfnsi*hyyktxxgfyxpiy
xixxxxxsdxi*viki---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB253 (SSB253Q) /CSM/SS/SSB2-C/SSB253Q.Seq.d/                        357   5e-98
SSF192 (SSF192Q) /CSM/SS/SSF1-D/SSF192Q.Seq.d/                         86   3e-16
AFD456 (AFD456Q) /CSM/AF/AFD4-C/AFD456Q.Seq.d/                         86   3e-16
VSJ869 (VSJ869Q) /CSM/VS/VSJ8-C/VSJ869Q.Seq.d/                         38   0.058
VSG601 (VSG601Q) /CSM/VS/VSG6-A/VSG601Q.Seq.d/                         36   0.23
SSF494 (SSF494Q) /CSM/SS/SSF4-D/SSF494Q.Seq.d/                         36   0.23
VFN377 (VFN377Q) /CSM/VF/VFN3-D/VFN377Q.Seq.d/                         34   0.90
VFJ783 (VFJ783Q) /CSM/VF/VFJ7-D/VFJ783Q.Seq.d/                         34   0.90
SSK449 (SSK449Q) /CSM/SS/SSK4-C/SSK449Q.Seq.d/                         34   0.90
SSK138 (SSK138Q) /CSM/SS/SSK1-B/SSK138Q.Seq.d/                         34   0.90

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    92  9e-21  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    86  1e-13  4
AL391649|AL391649.8 Human DNA sequence from clone RP11-202E10 on chromosome 9 Contains  GSSs and STSs.    48  0.047  1
AZ543535|AZ543535.1 ENTER80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.079  2
AZ538376|AZ538376.1 ENTEU51TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.080  2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34  0.25  6
AL163208|AL163208.1 Homo sapiens genomic DNA, chromosome 21q, section 7/105.    44  0.65  3
AC023574|AC023574.4 Homo sapiens chromosome 9 clone RP11-486D12 map 9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.66  2
BZ490744|BZ490744.1 BONSD03TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONSD03, DNA sequence.    38  1.1  2
BZ679031|BZ679031.1 PUBIP29TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa063F10, DNA sequence.    28  1.4  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_51(AC116305|pid:none) Dictyostelium discoideum chromoso...    62   6e-09

 psg: 0.87  gvh: 0.40  alm: 0.52  top: 0.37  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSB253 is nuc

>SSB253F.Seq
GAATGGGTCATGGAAAATATTTATTTAATAAGGTGGTAAAATTAAATATTGACTAATTCT
ANCTCTAGTTTGTTCAATATTTAATTTTACCACCTTATCAAAGAATGGNTCANGGNAAAT
ANTTATTTAATTCAATTTAGCACTATTACAAAACANTTNATGGNTTTTATNGACCAATTT
ATNNTATTANAANTGANNATNCATCTGATGNCATTTAAGTTATTAAGATTT---------
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