>SSB243 (SSB243Q) /CSM/SS/SSB2-B/SSB243Q.Seq.d/
TTTAATTTTTTTTTTTCACATCCATAGTAAAATATTTTATAACAACAATAATAATAATAC
TATTTAGTGAAAATAATAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTA
AAATAAAATAAATATTTANAAATGATTGCACTATTATTAGTACAAATAATATTCTTTGTA
GGGTATTATGTTATTGAGTATTACATTTGGXXXXXXXXXXCAGGTTCCCCAGGAGGACAA
TACGTTACACTGAGGAATTCTTACAAAAGCGTGGTGTTAAATTGATTTATAATGAACGTG
TTGTGGCTCATAGGGGTCAAACATTCATAACCGATCAGGGTAGTGAGATCATTGCTGAGC
AAGCGTTCCTTTGTACTGGTATCGCACCAAATTCAAATTTCATTAAAAACAGCTACCCCG
ATGCCATCTCTGAGAATGGTTACATCAAAGCTAACGACCAACTCCAGATGGCCGGCACTA
CATTCTATCGTAATATCTTTGTGTCTGGTGACGTCTTACATGTACGTGAAGAGAAGTTAG
CCCAAACTGCTGAATGCACAGCTTCAATAGTGGTCAATAATATCAATGCAATGGAAAGTC
GTTGTGAACATAAAATGCAATCTTATAAACCTTTTGCAAAACCTGTTTTAATAAGTCTTG
GAAAATATTCTGCTATCTTTGTTTATAAAGATTACTCAATAACTGGTTTCTTACCAGCTT
TATTAAAACAAGCTGTTGAATTTAAAACAATGGTTAGATATT

fnfffshp**nil*qq***yylvkiittisiiinyhltkvk*NKYLXMIALLLVQIIFFV
GYYVIEYYIW---

---RFPRRTIRYTEEFLQKRGVKLIYNERVVAHRGQTFITDQGSEIIAEQAFLCTGIAPN
SNFIKNSYPDAISENGYIKANDQLQMAGTTFYRNIFVSGDVLHVREEKLAQTAECTASIV
VNNINAMESRCEHKMQSYKPFAKPVLISLGKYSAIFVYKDYSITGFLPALLKQAVEFKTM
VRY

Frame A:
fnfffshp**nil*qq***yylvkiittisiiinyhltkvk*NKYLXMIALLLVQIIFFV
GYYVIEYYIW---

---qvpqedntlh*giltkawc*idl**tccgs*gsnihnrsg**dhc*asvplywyrtk
fkfh*kqlprchl*ewlhqs*rptpdgrhyils*ylcvw*rltct*revspnc*mhsfns
gq*yqcngksl*t*nail*tfcktcfnkswkifcylcl*rllnnwfltsfiktsc*i*nn
g*i

Frame B:
lifffhihskifynnnnnnti**k**llyq***tit*lk*nkinixk*lhyy*yk*ysl*
gimllsitf---

---RFPRRTIRYTEEFLQKRGVKLIYNERVVAHRGQTFITDQGSEIIAEQAFLCTGIAPN
SNFIKNSYPDAISENGYIKANDQLQMAGTTFYRNIFVSGDVLHVREEKLAQTAECTASIV
VNNINAMESRCEHKMQSYKPFAKPVLISLGKYSAIFVYKDYSITGFLPALLKQAVEFKTM
VRY

Frame C:
*fffftsivkyfittiiiilfsennnyyinnnklsln*skik*ifxndctiistnnilcr
vlcy*vlhl---

---gspggqyvtlrnsyksvvln*fimnvlwligvkhs*pirvvrsllskrsfvlvshqi
qislktatpmpslrmvtsklttnsrwpalhsivislclvtsymyvkrs*pkllnaqlq*w
siismqwkvvvnikcnlinllqnlf**vlenillslfikitq*lvsyqly*nkllnlkqw
ldi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB243 (SSB243Q) /CSM/SS/SSB2-B/SSB243Q.Seq.d/                       1247   0.0
SSD751 (SSD751Q) /CSM/SS/SSD7-C/SSD751Q.Seq.d/                       1059   0.0
SLA744 (SLA744Q) /CSM/SL/SLA7-B/SLA744Q.Seq.d/                       1059   0.0
SFE664 (SFE664Q) /CSM/SF/SFE6-C/SFE664Q.Seq.d/                       1013   0.0
CFI602 (CFI602Q) /CSM/CF/CFI6-A/CFI602Q.Seq.d/                       1013   0.0
AFD196 (AFD196Q) /CSM/AF/AFD1-D/AFD196Q.Seq.d/                       1013   0.0
AFA682 (AFA682Q) /CSM/AF/AFA6-D/AFA682Q.Seq.d/                       1013   0.0
AFE104 (AFE104Q) /CSM/AF/AFE1-A/AFE104Q.Seq.d/                       1007   0.0
SFI373 (SFI373Q) /CSM/SF/SFI3-D/SFI373Q.Seq.d/                        997   0.0
CFI354 (CFI354Q) /CSM/CF/CFI3-C/CFI354Q.Seq.d/                        959   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  0.039  5
AQ014359|AQ014359.1 RPCI11-23P7.TKBF RPCI-11 Homo sapiens genomic clone RPCI-11-23P7, genomic survey sequence.    50  0.040  1
AC007012|AC007012.1 Homo sapiens chromosome 16, clone 185J20, complete sequence.    50  0.040  1
B64477|B64477.1 CIT-HSP-2023G2.TF CIT-HSP Homo sapiens genomic clone 2023G2, genomic survey sequence.    44  0.092  2
AC025037|AC025037.4 Homo sapiens chromosome 01 clone RP11-21A22, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48  0.16  1
BB091390|BB091390.1 Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430029P21, 3' end partial sequence.    48  0.16  1
AV143580|AV143580.1 Mus musculus 10-11 day embryo cDNA, partial sequence, clone 2810431D15.    48  0.16  1
CA059743|CA059743.1 ssalrgb522275 mixed_tissue Salmo salar cDNA, mRNA sequence.    48  0.16  1
AC117823|AC117823.3 Mus musculus clone RP24-67I3, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48  0.16  1
BY712226|BY712226.1 Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810431D15, 5' end partial sequence.    48  0.16  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8BUE4) RecName: Full=Apoptosis-inducing factor 2;          EC=...    77   8e-13
(Q9BRQ8) RecName: Full=Apoptosis-inducing factor 2;          EC=...    75   2e-12
AK117798_1(AK117798|pid:none) Arabidopsis thaliana At5g22140 mRN...    71   3e-11
BT074103_1(BT074103|pid:none) Oncorhynchus mykiss clone omyk-evo...    71   3e-11
BX537621_1(BX537621|pid:none) Homo sapiens mRNA; cDNA DKFZp686H1...    71   3e-11
AL589883_25(AL589883|pid:none) Arabidopsis thaliana DNA chromoso...    71   3e-11
BT021162_1(BT021162|pid:none) Bos taurus apoptosis-inducing fact...    70   7e-11
BC038129_1(BC038129|pid:none) Mus musculus apoptosis-inducing fa...    69   1e-10
BC167890_1(BC167890|pid:none) Xenopus tropicalis cDNA clone MGC:...    67   5e-10
AP007161_561(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    64   5e-09

 psg: 0.95  gvh: 0.46  alm: 0.21  top: 0.60  tms: 0.07  mit: 0.25  mip: 0.07
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSB243 is nuc

>SSB243F.Seq
TTTAATTTTTTTTTTTCACATCCATAGTAAAATATTTTATAACAACAATAATAATAATAC
TATTTAGTGAAAATAATAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTA
AAATAAAATAAATATTTANAAATGATTGCACTATTATTAGTACAAATAATATTCTTTGTA
GGGTATTATGTTATTGAGTATTACATTTGG----------

>SSB243Z.Seq
----------CAGGTTCCCCAGGAGGACAATACGTTACACTGAGGAATTCTTACAAAAGC
GTGGTGTTAAATTGATTTATAATGAACGTGTTGTGGCTCATAGGGGTCAAACATTCATAA
CCGATCAGGGTAGTGAGATCATTGCTGAGCAAGCGTTCCTTTGTACTGGTATCGCACCAA
ATTCAAATTTCATTAAAAACAGCTACCCCGATGCCATCTCTGAGAATGGTTACATCAAAG
CTAACGACCAACTCCAGATGGCCGGCACTACATTCTATCGTAATATCTTTGTGTCTGGTG
ACGTCTTACATGTACGTGAAGAGAAGTTAGCCCAAACTGCTGAATGCACAGCTTCAATAG
TGGTCAATAATATCAATGCAATGGAAAGTCGTTGTGAACATAAAATGCAATCTTATAAAC
CTTTTGCAAAACCTGTTTTAATAAGTCTTGGAAAATATTCTGCTATCTTTGTTTATAAAG
ATTACTCAATAACTGGTTTCTTACCAGCTTTATTAAAACAAGCTGTTGAATTTAAAACAA
TGGTTAGATATT

>SSB243P.Seq
TTTAATTTTTTTTTTTCACATCCATAGTAAAATATTTTATAACAACAATAATAATAATAC
TATTTAGTGAAAATAATAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTA
AAATAAAATAAATATTTANAAATGATTGCACTATTATTAGTACAAATAATATTCTTTGTA
GGGTATTATGTTATTGAGTATTACATTTGG----------CAGGTTCCCCAGGAGGACAA
TACGTTACACTGAGGAATTCTTACAAAAGCGTGGTGTTAAATTGATTTATAATGAACGTG
TTGTGGCTCATAGGGGTCAAACATTCATAACCGATCAGGGTAGTGAGATCATTGCTGAGC
AAGCGTTCCTTTGTACTGGTATCGCACCAAATTCAAATTTCATTAAAAACAGCTACCCCG
ATGCCATCTCTGAGAATGGTTACATCAAAGCTAACGACCAACTCCAGATGGCCGGCACTA
CATTCTATCGTAATATCTTTGTGTCTGGTGACGTCTTACATGTACGTGAAGAGAAGTTAG
CCCAAACTGCTGAATGCACAGCTTCAATAGTGGTCAATAATATCAATGCAATGGAAAGTC
GTTGTGAACATAAAATGCAATCTTATAAACCTTTTGCAAAACCTGTTTTAATAAGTCTTG
GAAAATATTCTGCTATCTTTGTTTATAAAGATTACTCAATAACTGGTTTCTTACCAGCTT
TATTAAAACAAGCTGTTGAATTTAAAACAATGGTTAGATATT