SSB238
Library SS
(Link to library)
Clone ID SSB238
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15330-1
Original site URL
Representative seq. ID SSB238Z
(Link to Original site)
Representative DNA sequence
>SSB238 (SSB238Q) /CSM/SS/SSB2-B/SSB238Q.Seq.d/
XXXXXXXXXXAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTG
TACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATG
GTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATA
TTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTA
TCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCC
GTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCAC
GTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTG
ATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAA
ATTATAATC
sequence update 1998. 5. 2
Translated Amino Acid sequence
---NYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYI
TKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTAR
HSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn


Translated Amino Acid sequence (All Frames)
Frame A:
---NYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYI
TKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTAR
HSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn


Frame B:
---tmm*lvlmkanfsqtlynlvktwqikvkpl*lph*mvpskenhsnqsli*yqrlnil
qs*lpfvwfatmkppfqnvsskvmisn*lvv*inifpfavvativikmkeivpnqakphv
ililkahhpllhll*tlilmii*imiinyedpnyictl*iii


Frame C:
---l*cnwy**rpifprrcti**rlgksr*nryncrtrwylpkktipish*fsikg*iyy
kvncrlygllq*srlfktyrrk**yrinwwyr*iyfrlpwllq**sk*rk*yqtkqnrts
fsfskrtircstcckh*s**sfk**llimkiliifvhykl*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/ 950 0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/ 950 0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/ 950 0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/ 950 0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/ 950 0.0
SSB238 (SSB238Q) /CSM/SS/SSB2-B/SSB238Q.Seq.d/ 950 0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/ 950 0.0
AFB533 (AFB533Q) /CSM/AF/AFB5-B/AFB533Q.Seq.d/ 950 0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/ 944 0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/ 942 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds. 950 0.0 1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds. 894 0.0 1
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence. 56 4e-04 1
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 0.002 2
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence. 50 0.025 1
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence. 50 0.025 1
AC096524|AC096524.7 Rattus norvegicus clone CH230-83D23, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 46 0.39 1
BH973506|BH973506.1 odi29h07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 40 1.0 2
AC004037|AC004037.1 Homo sapiens chromosome 5, BAC clone 64o24, BAC 5001 (LBNL H101), complete sequence. 44 1.6 1
AC129713|AC129713.1 Homo sapiens chromosome 5 clone RP11-391B2, complete sequence. 44 1.6 1
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi... 142 5e-33
DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom... 141 7e-33
(P04364) RecName: Full=Thymidine kinase; EC=2.7.1.21; ... 141 7e-33
(P68563) RecName: Full=Thymidine kinase; EC=2.7.1.21; ... 140 2e-32
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene... 140 2e-32
K02031_1(K02031|pid:none) Variola major virus thymidine kinase g... 139 3e-32
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ... 139 3e-32
(P16600) RecName: Full=Thymidine kinase; EC=2.7.1.21; ... 139 3e-32
AY773086_1(AY773086|pid:none) Goatpox virus isolate Liujiang/200... 139 4e-32
AF012825_78(AF012825|pid:none) Ectromelia virus strain Moscow, c... 139 4e-32
protein update 2009. 6. 8
PSORT

psg: 0.75 gvh: 0.49 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: Golgi
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSB238 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB238Z
3' end seq.
>SSB238Z.Seq
----------AAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTG
TACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATG
GTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATA
TTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTA
TCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCC
GTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCAC
GTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTG
ATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAA
ATTATAATC
Length of 3' end seq. 479
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -