>SSB215 (SSB215Q) /CSM/SS/SSB2-A/SSB215Q.Seq.d/
AAAATATAGAAAATGTCAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGAT
GTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTT
TTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTT
ACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAA
AAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCT
TGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAA
TTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGA
TCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTXXXXXXXXXX

ki*KMSVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAF
TPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSE
FTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKH---

Frame A:
ki*KMSVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAF
TPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSE
FTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKH---


Frame B:
kyrkcqlnqllklvkkfqwmll*vkhshqsmvfvqwhqkfyqvnfsktvklfyslfqvll
lqlvqpniyqvllknqkklkkkvslksfvlppmthll*vlgvktlmqvlqllyfqmvtln
slkrldlkwmvrlsylvktdlkdml*sltlvlsni---


Frame C:
nienvs*isy*sw*kssngcyfr*stptsrwclcngtksfir*tfqrp*scfircsrcfy
snlfsqtftrfy*kirrn*kkryl*nllychq*picyeclg*rr*crycsyftfrw*l*i
h*kdwt*ngw*gfltw*rqiskicydp*lwccqt---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        872   0.0
SSB215 (SSB215Q) /CSM/SS/SSB2-A/SSB215Q.Seq.d/                        872   0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/                        856   0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/                        842   0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        839   0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/                        839   0.0
VHJ449 (VHJ449Q) /CSM/VH/VHJ4-C/VHJ449Q.Seq.d/                        839   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        839   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                        833   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        833   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48  1e-06  2
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46  0.38  1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46  0.38  1
AC132016|AC132016.3 Rattus norvegicus clone CH230-218A13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.38  1
U05324|U05324.1 Borrelia burgdorferi CA12 outer surface protein D (ospD) gene, complete cds.    40  5.0  2
U05305|U05305.1 Borrelia burgdorferi 27985 outer surface protein D (ospD) gene, complete cds.    40  5.1  2
U05304|U05304.1 Borrelia burgdorferi 3028 outer surface protein D (ospD) gene, complete cds.    40  5.1  2
U05326|U05326.1 Borrelia burgdorferi lp5 outer surface protein D (ospD) gene, complete cds.    40  5.1  2
L34055|L34055.1 Borrelia burgdorferi outer surface protein D (ospD) gene, complete cds.    40  5.2  2
U05327|U05327.1 Borrelia burgdorferi lp7 outer surface protein D (ospD) gene, complete cds.    40  5.3  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   119   3e-26
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   119   4e-26
CP000248_1994(CP000248|pid:none) Novosphingobium aromaticivorans...   117   1e-25
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   114   1e-24
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...   114   1e-24
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...   112   5e-24
BX640426_146(BX640426|pid:none) Bordetella parapertussis strain ...   112   5e-24
AF498232_1(AF498232|pid:none) Branchiostoma belcheri tsingtaunes...   111   7e-24
AE015451_2674(AE015451|pid:none) Pseudomonas putida KT2440 compl...   111   9e-24
CP000790_1683(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   110   1e-23

 psg: 0.58  gvh: 0.51  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSB215 is cyt

>SSB215F.Seq
AAAATATAGAAAATGTCAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGAT
GTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTT
TTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTT
ACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAA
AAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCT
TGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAA
TTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGA
TCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAACATCT----------