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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB214
Library SS
(Link to library)
Clone ID SSB214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09803-1
Original site URL
Representative seq. ID SSB214F
(Link to Original site)
Representative DNA sequence 
>SSB214 (SSB214Q) /CSM/SS/SSB2-A/SSB214Q.Seq.d/
AAAAAATATATCATATTTATAGTTTTTGATATTTATTTATATATTTATTTATTATATATA
CACACCTTTTTTTACTTATTTATTAAACTATTTTATTATTAAAAAGATTATTAAAATAAA
ATATAATATAATTTTTTAATAATTTAAGAAACTCAAAAAAAAAAAAACACAAAAAAAAAA
AAAAAATCAAACCTTTGTAAATTATTGTAAAAAAAAAAAAAAACAAAAACAAAAAGAAAA
AACAATGGATTTAAATAAAGAATGGGXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
knisyl*flifiyifiyyiytpfftyllnyfiikkiikikyniif**FKKLKKKKTQKKK
KNQTFVNYCKKKKKQKQKEKTMDLNKEW---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkyiifivfdiylyiyllyihtffylfiklfyy*kdy*nki*ynflii*etqkkkntkkk
kksnlckll*kkkktktkrknngfk*rm---


Frame B:
knisyl*flifiyifiyyiytpfftyllnyfiikkiikikyniif**FKKLKKKKTQKKK
KNQTFVNYCKKKKKQKQKEKTMDLNKEW---


Frame C:
kiyhiysf*ylfiylfiiythlflliy*tilllkrllk*nii*ffnnlrnskkkkhkkkk
kikpl*iivkkkknknkkkkqwi*ikn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB214 (SSB214Q) /CSM/SS/SSB2-A/SSB214Q.Seq.d/                         48   7e-05
VSK226 (VSK226Q) /CSM/VS/VSK2-B/VSK226Q.Seq.d/                         32   4.1
VFD125 (VFD125Q) /CSM/VF/VFD1-B/VFD125Q.Seq.d/                         32   4.1
AHD770 (AHD770Q) /CSM/AH/AHD7-C/AHD770Q.Seq.d/                         32   4.1
AFJ787 (AFJ787Q) /CSM/AF/AFJ7-D/AFJ787Q.Seq.d/                         32   4.1
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    48  0.054  1
L46371|L46371.1 Dictyostelium discoideum cortexillin II mRNA, complete cds.    48  0.054  1
AC102974|AC102974.5 Rattus norvegicus clone CH230-75I13, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40     13  1
AC094391|AC094391.5 Rattus norvegicus clone CH230-3L12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40     13  1
dna update 2003. 7.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 75,118,212
protein update 2009. 6. 8
PSORT 

 psg: 0.47  gvh: -0.14  alm: 0.92  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.80  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSB214 is nuc
5' end seq. ID SSB214F
5' end seq. 
>SSB214F.Seq
AAAAAATATATCATATTTATAGTTTTTGATATTTATTTATATATTTATTTATTATATATA
CACACCTTTTTTTACTTATTTATTAAACTATTTTATTATTAAAAAGATTATTAAAATAAA
ATATAATATAATTTTTTAATAATTTAAGAAACTCAAAAAAAAAAAAACACAAAAAAAAAA
AAAAAATCAAACCTTTGTAAATTATTGTAAAAAAAAAAAAAAACAAAAACAAAAAGAAAA
AACAATGGATTTAAATAAAGAATGGG----------
Length of 5' end seq. 266
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -