>SSB204 (SSB204Q) /CSM/SS/SSB2-A/SSB204Q.Seq.d/
ATTTTTTTTTTCAATTCTTTTTTTTTTCGAATAAACACTCCAATTTATAAAAATATCATT
TATCTGATATAACCTCGGCCGAAAGAAATTACCAAAAAATGAGATTAATTGCTGCTCTTT
TATCTGTATTATTAATAGCTTCAACTGCTCAATCAACTGTTACAATTTATGAAAGTTCAA
AACCAGGTGATTTTGACTTTTATTTATTTGTTCAACAATGGATTTATTCATACTGCGATT
CACAAACTTGTATTCAAAATAAAGAAAGAGAAGCATTCACTATCCATGGTTTATGGCCAG
AGAATAGTGATGGCAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAATGCTA
TCCAAGATTTAGAAGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAACACTG
ATTTCTGGACTCACGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAATCACAG
ATATTCACGATTATTTCGCTACTGGTATCAAACTTTACAXXXXXXXXXX

fffqffffsnkhsnl*KYHLSDITSAERNYQKMRLIAALLSVLLIASTAQSTVTIYESSK
PGDFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAI
QDLEDQLNFDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLY---

Frame A:
ifffnsfffrintpiykniiyli*prpkeitkk*d*lllfylyy**lqllnqllqfmkvq
nqviltfiylfnngfihtaihklvfkikkekhslsmvygqrivmavihhsvqvhhsmlml
ski*kin*tlighhslvqtlisgltnsanmvlvqsqvqsqiftiisllvsnf---


Frame B:
fffsilfffe*tlqfikisfi*ynlgrkklpkneinccsficiinsfncsincynl*kfk
tr*f*llficstmdlfilrftnlysk*rkrsihypwfmare**wqlsiilfrsiiqc*cy
prfrrsikl*laithwskh*fldsriqqtwylfnhrsnhrysrlfrywyqtl---


Frame C:
fffqffffsnkhsnl*KYHLSDITSAERNYQKMRLIAALLSVLLIASTAQSTVTIYESSK
PGDFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAI
QDLEDQLNFDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLY---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI141 (SSI141Q) /CSM/SS/SSI1-B/SSI141Q.Seq.d/                        975   0.0
SSB204 (SSB204Q) /CSM/SS/SSB2-A/SSB204Q.Seq.d/                        975   0.0
VHB567 (VHB567Q) /CSM/VH/VHB5-C/VHB567Q.Seq.d/                        959   0.0
VFI169 (VFI169Q) /CSM/VF/VFI1-C/VFI169Q.Seq.d/                        876   0.0
VFH722 (VFH722Q) /CSM/VF/VFH7-A/VFH722Q.Seq.d/                        823   0.0
VFL529 (VFL529Q) /CSM/VF/VFL5-B/VFL529Q.Seq.d/                        767   0.0
VFL650 (VFL650Q) /CSM/VF/VFL6-C/VFL650Q.Seq.d/                        765   0.0
SSF854 (SSF854Q) /CSM/SS/SSF8-C/SSF854Q.Seq.d/                        753   0.0
SSA623 (SSA623Q) /CSM/SS/SSA6-A/SSA623Q.Seq.d/                        674   0.0
CFG528 (CFG528Q) /CSM/CF/CFG5-B/CFG528Q.Seq.d/                        670   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    62  2e-22  7
AC117049|AC117049.4 Rattus norvegicus clone CH230-14J22, WORKING DRAFT SEQUENCE, 1 ordered piece.    38  0.40  5
AL024509|AL024509.1 Human DNA sequence from clone 522P13 on chromosome 6p21.31-22.3.  Contains a 60S Ribosomal Protein L21 pseudogene and an HNRNP A3  (Heterogenous Nuclear Riboprotein A3, FBRNP) pseudogene. Contains  ESTs, STSs and GSSs.    48  0.46  3
AC073087|AC073087.4 Homo sapiens chromosome 1 clone RP11-317F13, WORKING DRAFT SEQUENCE, 12 unordered pieces.    48  0.99  2
AC132137|AC132137.1 Mus musculus chromosome UNK clone RP23-153E2, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  1.3  5
AC034242|AC034242.6 Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence.    44  1.7  1
AC068618|AC068618.2 Homo sapiens chromosome 15 clone RP11-597G23, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44  1.7  1
AC143323|AC143323.1 Homo sapiens chromosome 16 clone RP11-779G22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.7  1
BX374306|BX374306.1 human full-length cDNA 3-PRIME end of clone CS0DL010YG11 of B CELLS  (RAMOS CELL LINE) COT 25-NORMALIZED of Homo sapiens (human).    44  1.7  1
AC141454|AC141454.1 Homo sapiens chromosome 16 clone RP11-431J14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7M438) RecName: Full=Ribonuclease DdI;          Short=RNase Dd...   272   4e-72
JE0316(JE0316;JE0407)protozoan RNase,DdI - slime mold (Dictyoste...   257   1e-67
AC146971_5(AC146971|pid:none) Medicago truncatula clone mth2-128...   106   4e-22
AB211503_1(AB211503|pid:none) Drosera adelae RNase DA-I mRNA for...   105   7e-22
(P42813) RecName: Full=Ribonuclease 1;          EC=3.1.27.1; Fla...   104   1e-21
AY086747_1(AY086747|pid:none) Arabidopsis thaliana clone 27242 m...   104   1e-21
S66342(S66342) ribonuclease II (EC 3.1.-.-) precursor, wound-ind...   103   2e-21
U13256_1(U13256|pid:none) Nicotiana alata RNase NE mRNA, complet...   103   3e-21
AJ012689_1(AJ012689|pid:none) Cicer arietinum mRNA for ribonucle...   102   4e-21
AB034248_1(AB034248|pid:none) Volvox carteri vrn1 mRNA for S-lik...   102   7e-21

 psg: 0.75  gvh: 0.81  alm: 0.29  top: 0.33  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.59  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSB204 is cyt

>SSB204F.Seq
ATTTTTTTTTTCAATTCTTTTTTTTTTCGAATAAACACTCCAATTTATAAAAATATCATT
TATCTGATATAACCTCGGCCGAAAGAAATTACCAAAAAATGAGATTAATTGCTGCTCTTT
TATCTGTATTATTAATAGCTTCAACTGCTCAATCAACTGTTACAATTTATGAAAGTTCAA
AACCAGGTGATTTTGACTTTTATTTATTTGTTCAACAATGGATTTATTCATACTGCGATT
CACAAACTTGTATTCAAAATAAAGAAAGAGAAGCATTCACTATCCATGGTTTATGGCCAG
AGAATAGTGATGGCAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAATGCTA
TCCAAGATTTAGAAGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAACACTG
ATTTCTGGACTCACGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAATCACAG
ATATTCACGATTATTTCGCTACTGGTATCAAACTTTACA----------