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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB202
Library SS
(Link to library)
Clone ID SSB202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10253-1
Original site URL
Representative seq. ID SSB202E
(Link to Original site)
Representative DNA sequence 
>SSB202 (SSB202Q) /CSM/SS/SSB2-A/SSB202Q.Seq.d/
CATAAATATATAATATATAATATATAAATAAAATGTCATCAGAAGACGGTATTAAGAAAT
TATTAGATGCTGAAAGAACTGCACAAAAAATCGTTGCAGATGCCAGACAAGATAGAGTTC
AAAAATTAAAGAAAGCAGTCGAAGAAGCTGAAAAAGAAATCAAAGAATTTAGAGAGAAAA
AAGATAAAGAATACAAAGAATNTGAATCAAAATATTTAGGTGCTTCATCTGAAACTGCTT
CACAATTAGCCACCAACGCTAACAAAGAAATTGATACCATCAGAAACGAAACTGCTGCCA
ACAAACAAAAAGTTGTTGATCTCCTCATCAAATACGCAATCACCTGTGACAATTAAAATA
TTTAGTGTTTAAACATAAATAAAATAAAAGTAAAATAAAAAAGTAAAATAAATAAAAAAA
ATAAAAAAAATATAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
*iyni*YINKMSSEDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKK
DKEYKEXESKYLGASSETASQLATNANKEIDTIRNETAANKQKVVDLLIKYAITCDN*ni
*clninkikvk*kskinkknkknikfkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hkyiiyni*ikchqktvlrny*mlkelhkkslqmpdkiefkn*rkqskklkkksknlerk
kikntknxnqni*vlhlkllhn*pptltkklipsetkllptnkkllisssntqspvtiki
fsv*t*ik*k*nkkvk*ikkikki*nlkkkkkkkk


Frame B:
ini*yiiyk*nvirrry*eiirc*knctknrcrcqtr*sskikessrrs*krnqri*rek
r*riqrx*ikifrcfi*ncftishqr*qrn*yhqkrnccqqtksc*sphqirnhl*qlky
lvfkhk*nkskikk*nk*kk*kkyki*kkkkkkk


Frame C:
*iyni*YINKMSSEDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKK
DKEYKEXESKYLGASSETASQLATNANKEIDTIRNETAANKQKVVDLLIKYAITCDN*ni
*clninkikvk*kskinkknkknikfkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI330 (VSI330Q) /CSM/VS/VSI3-B/VSI330Q.Seq.d/                        349   2e-95
VSH355 (VSH355Q) /CSM/VS/VSH3-C/VSH355Q.Seq.d/                        349   2e-95
VSF751 (VSF751Q) /CSM/VS/VSF7-C/VSF751Q.Seq.d/                        349   2e-95
VSE511 (VSE511Q) /CSM/VS/VSE5-A/VSE511Q.Seq.d/                        349   2e-95
VFI525 (VFI525Q) /CSM/VF/VFI5-B/VFI525Q.Seq.d/                        349   2e-95
VFE582 (VFE582Q) /CSM/VF/VFE5-D/VFE582Q.Seq.d/                        349   2e-95
SSL140 (SSL140Q) /CSM/SS/SSL1-B/SSL140Q.Seq.d/                        349   2e-95
SSJ202 (SSJ202Q) /CSM/SS/SSJ2-A/SSJ202Q.Seq.d/                        349   2e-95
SSI155 (SSI155Q) /CSM/SS/SSI1-C/SSI155Q.Seq.d/                        349   2e-95
SSD354 (SSD354Q) /CSM/SS/SSD3-C/SSD354Q.Seq.d/                        349   2e-95
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM180963|BM180963.1 daj83h10.x1 NICHD_XGC_Li1 Xenopus laevis cDNA clone IMAGE:5129707 3', mRNA sequence.    42  5.8  1
AC134837|AC134837.2 Mus musculus chromosome UNK clone RP24-338L20, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  5.8  1
AC126064|AC126064.4 Rattus norvegicus clone CH230-11M19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  5.8  1
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          42  5.8  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF197846_3(EF197846|pid:none) Arabidopsis halleri miR319a microR...    36   0.36
AJ005902_1(AJ005902|pid:none) Arabidopsis thaliana mRNA for V-AT...    36   0.47
(O82629) RecName: Full=V-type proton ATPase subunit G2;         ...    36   0.47
EF677429_1(EF677429|pid:none) Picea sitchensis clone WS02768_L02...    35   0.62
CP001325_86(CP001325|pid:none) Micromonas sp. RCC299 chromosome ...    33   2.4
Z81056_4(Z81056|pid:none) Caenorhabditis elegans Cosmid F09F3, c...    33   3.1
T20664(T20664)hypothetical protein F09F3.2 - Caenorhabditis eleg...    33   3.1
AK340101_1(AK340101|pid:none) Acyrthosiphon pisum ACYPI000034 mR...    32   5.2
AY834222_1(AY834222|pid:none) Trichophyton rubrum vacuolar ATPas...    32   6.8
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSB202 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSB202E
Full length Seq. 
>SSB202E.Seq
CATAAATATATAATATATAATATATAAATAAAATGTCATCAGAAGACGGTATTAAGAAAT
TATTAGATGCTGAAAGAACTGCACAAAAAATCGTTGCAGATGCCAGACAAGATAGAGTTC
AAAAATTAAAGAAAGCAGTCGAAGAAGCTGAAAAAGAAATCAAAGAATTTAGAGAGAAAA
AAGATAAAGAATACAAAGAATNTGAATCAAAATATTTAGGTGCTTCATCTGAAACTGCTT
CACAATTAGCCACCAACGCTAACAAAGAAATTGATACCATCAGAAACGAAACTGCTGCCA
ACAAACAAAAAGTTGTTGATCTCCTCATCAAATACGCAATCACCTGTGACAATTAAAATA
TTTAGTGTTTAAACATAAATAAAATAAAAGTAAAATAAAAAAGTAAAATAAATAAAAAAA
ATAAAAAAAATATAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 465