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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB196
Library SS
(Link to library)
Clone ID SSB196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04512-1
Original site URL
Representative seq. ID SSB196Z
(Link to Original site)
Representative DNA sequence 
>SSB196 (SSB196Q) /CSM/SS/SSB1-D/SSB196Q.Seq.d/
XXXXXXXXXXTTACGTTGTTAAGTTTTGGGGGGGGGGGGGTTCGGAGGTGGTTTGTGGTT
TGTGGTGTGTGTACTCACTTTAGGGGTGGGAACCACTTTTCCCCCCCTTTCCTTTTTCCC
CCCCGGGCCCNGGGGGGGGTACTCAGGGGGACCCGGGTGGGGGGGGGGCCCCACCCCCTT
TCCCCCCCCTGGAAAGGGGTTATTTTTTTCCNAANTTGGGGGGANTGGGGGGACCGGGAA
ACCCCCAACCCCGGGGGGGGGGAGGGGGATTCCAACCAAACCTTTTTGGGGGAGGCCCCC
CCCCGGGGGGGGATATTTTAAGGGAAAGGGGGGGGCCCACTTATTACCTTTTTAATTAAA
ATAAATAAATAAAATTTTGGGTAACTCATTATCTTTAATAATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 7.16
Translated Amino Acid sequence 
---rc*VLGGGGFGGGLWFVVCVLTLGVGTTFPPLSFFPPGPXGGYSGGPGWGGGPTPFP
PPGKGLFFSXXGGXGGTGKPPTPGGGRGIPTKPFWGRPPPGGGYFKGKGGAHLLPF*lk*
inkilgnslsliikkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---yvvkfwggggsevvcglwcvysl*gweplfppfpfsppgpgggtqgdpggggapppf
pplergyffpxlggxggpgnpqprgggggfqpnlfgggpppggdilrerggptyylfn*n
k*ikfwvthyl***kkkkkkkkkkkkkkkk


Frame B:
---tllsfggggvrrwfvvcgvcthfrggnhfsppflfppraxggvlrgtrvgggphpls
ppwkgviffxxwgxwgdretpnpgggegdsnqtflgeapprggif*gkgggplitfliki
nk*nfg*liifnnkkkkkkkkkkkkkkkkk


Frame C:
---rc*VLGGGGFGGGLWFVVCVLTLGVGTTFPPLSFFPPGPXGGYSGGPGWGGGPTPFP
PPGKGLFFSXXGGXGGTGKPPTPGGGRGIPTKPFWGRPPPGGGYFKGKGGAHLLPF*lk*
inkilgnslsliikkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB196 (SSB196Q) /CSM/SS/SSB1-D/SSB196Q.Seq.d/                        133   3e-30
SSK158 (SSK158Q) /CSM/SS/SSK1-C/SSK158Q.Seq.d/                         64   2e-09
FC-BE16 (FC-BE16Q) /CSM/FC/FC-BE/FC-BE16Q.Seq.d/                       46   5e-04
VSJ294 (VSJ294Q) /CSM/VS/VSJ2-D/VSJ294Q.Seq.d/                         44   0.002
VSA123 (VSA123Q) /CSM/VS/VSA1-A/VSA123Q.Seq.d/                         44   0.002
SSM347 (SSM347Q) /CSM/SS/SSM3-B/SSM347Q.Seq.d/                         44   0.002
SSL481 (SSL481Q) /CSM/SS/SSL4-D/SSL481Q.Seq.d/                         44   0.002
SSL202 (SSL202Q) /CSM/SS/SSL2-A/SSL202Q.Seq.d/                         44   0.002
SSK257 (SSK257Q) /CSM/SS/SSK2-C/SSK257Q.Seq.d/                         44   0.002
SSC112 (SSC112Q) /CSM/SS/SSC1-A/SSC112Q.Seq.d/                         44   0.002
own update 2004. 7.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL596384|AL596384.17 Mouse DNA sequence from clone RP23-353J21 on chromosome 11.    44  0.001  3
AC124685|AC124685.5 Mus musculus chromosome 2 clone RP24-385O22, complete sequence.    52  0.006  1
Z69669|Z69669.1 D.schiavazzii satellite DNA (clone vetpvu1).      52  0.006  1
AL928689|AL928689.7 Mouse DNA sequence from clone RP23-35P3 on chromosome 2.    52  0.006  1
CC489565|CC489565.1 CH240_322F9.T7 CHORI-240 Bos taurus genomic clone CH240_322F9, genomic survey sequence.    52  0.006  1
BZ887756|BZ887756.1 CH240_284N15.TV CHORI-240 Bos taurus genomic clone CH240_284N15, DNA sequence.    50  0.023  1
AC108893|AC108893.2 Bos taurus clone RP42-500G8, WORKING DRAFT SEQUENCE, 1 ordered piece.    50  0.023  1
BZ065676|BZ065676.1 lix22d03.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50  0.023  1
U39850|U39850.3 Caenorhabditis elegans cosmid F52C9, complete sequence.    50  0.023  1
AC015712|AC015712.10 Homo sapiens chromosome 15 clone RP11-66B24 map 15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  0.051  2
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK295973_1(AK295973|pid:none) Homo sapiens cDNA FLJ60588 complet...    34   1.8
protein update 2009. 1.26
PSORT 

 psg: 0.97  gvh: 0.63  alm: 0.30  top: 0.53  tms: 0.07  mit: -0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSB196 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB196Z
3' end seq. 
>SSB196Z.Seq
----------TTACGTTGTTAAGTTTTGGGGGGGGGGGGGTTCGGAGGTGGTTTGTGGTT
TGTGGTGTGTGTACTCACTTTAGGGGTGGGAACCACTTTTCCCCCCCTTTCCTTTTTCCC
CCCCGGGCCCNGGGGGGGGTACTCAGGGGGACCCGGGTGGGGGGGGGGCCCCACCCCCTT
TCCCCCCCCTGGAAAGGGGTTATTTTTTTCCNAANTTGGGGGGANTGGGGGGACCGGGAA
ACCCCCAACCCCGGGGGGGGGGAGGGGGATTCCAACCAAACCTTTTTGGGGGAGGCCCCC
CCCCGGGGGGGGATATTTTAAGGGAAAGGGGGGGGCCCACTTATTACCTTTTTAATTAAA
ATAAATAAATAAAATTTTGGGTAACTCATTATCTTTAATAATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 444
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -