>SSB194 (SSB194Q) /CSM/SS/SSB1-D/SSB194Q.Seq.d/
CAAGTTTACAATGANACCAAATATTTATTGATCACTGTACTTCGTTCATTGGCTTCAACT
CCTGGTACCGGTGATATGGGTGCATCTTTAGCAGAGGTTGCTAAACATGCTGCACTCAAT
AAGAATCAAGATATTGTAGATAACATTAAAAAGATATTGGTCAATGTAAAGAAACTCTCA
TTGGAAGGCTATTTGAAAGGTGAAGATGATAATTTCACTCAACTTCGTAAAGATATCGTA
GCGGAATXXXXXXXXXXCATCACATATCTATCTACACACATGGATACTACGTAAAATATC
TCTCAATGTTCGTGAAATTGTGGTACCCAATGCAAGTGGTAGTAGTGATAAGAAATCAAA
GAAGGATAAAGATAAAAACAAAGATAAAGACTCTTCCACTGATAAAGCAACTGGAAAGAA
AGCTATGGTTAAAAAGGGTCCTTTCAAATTTAGTTACAATCAAATGGAAAAGGATGGCTT
AATCTGTCAATCCGAAGTACCAGAAGATAGAAGATCAAACATATTCTTCTCTTTTAGTTC
TGAATCTCCTGGTATCTACGATGTCGTATTAATCTATAGAACTACCGCTGTCTCTGAAAT
TAGGTTACAATTAGATGAACTCTTGGAAATGCAATCAAATGGTCAAACTGAATACGAAAC
AACTTTCTTTAAATTAAATGTTAATTTATTGTTATATGTTTTAAATAAAACATTTATTTC
ATAAATTAATTATAGAATTTTTTTTAAAAAAAAAAAAAATAAAATAAAAAGAAGT

QVYNXTKYLLITVLRSLASTPGTGDMGASLAEVAKHAALNKNQDIVDNIKKILVNVKKLS
LEGYLKGEDDNFTQLRKDIVAE---

---SHIYLHTWILRKISLNVREIVVPNASGSSDKKSKKDKDKNKDKDSSTDKATGKKAMV
KKGPFKFSYNQMEKDGLICQSEVPEDRRSNIFFSFSSESPGIYDVVLIYRTTAVSEIRLQ
LDELLEMQSNGQTEYETTFFKLNVNLLLYVLNKTFIS*inyriffkkkknkikrs

Frame A:
QVYNXTKYLLITVLRSLASTPGTGDMGASLAEVAKHAALNKNQDIVDNIKKILVNVKKLS
LEGYLKGEDDNFTQLRKDIVAE---

---hhisiythgyyvkylsmfvklwypmqvvvvirnqrrikiktkiktlplikqlerklw
lkrvlsnlvtikwkrma*svnpkyqkiedqtyssllvlnllvstmsy*sielplslklgy
n*mnswkcnqmvklntkqlsln*mliycymf*ikhlfhkliiefflkkkkik*ke

Frame B:
kftmxpniy*slyfvhwlqllvpviwvhl*qrllnmlhsirikil*itlkrywsm*rnsh
wkai*kvkmiislnfvkis*rn---

---itylsthmdtt*nisqcs*ncgtqckw****eikeg*r*kqr*rlfh**snwkesyg
*kgsfqi*lqsngkgwlnlsirstrr*kikhillf*f*iswylrcrinl*nyrcl*n*vt
ir*tlgnaikwsn*irnnfl*ikc*fivicfk*niyfin*l*nff*kkkk*nkkk

Frame C:
slq*xqifidhctsfigfnswyr*ygcifsrgc*tcctq*esrycr*h*kdigqcketli
grlfer*r**fhsts*ryrsg---

---SHIYLHTWILRKISLNVREIVVPNASGSSDKKSKKDKDKNKDKDSSTDKATGKKAMV
KKGPFKFSYNQMEKDGLICQSEVPEDRRSNIFFSFSSESPGIYDVVLIYRTTAVSEIRLQ
LDELLEMQSNGQTEYETTFFKLNVNLLLYVLNKTFIS*inyriffkkkknkikrs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB194 (SSB194Q) /CSM/SS/SSB1-D/SSB194Q.Seq.d/                       1411   0.0
FC-AB15 (FC-AB15Q) /CSM/FC/FC-AB/FC-AB15Q.Seq.d/                      854   0.0
SLH303 (SLH303Q) /CSM/SL/SLH3-A/SLH303Q.Seq.d/                        406   e-112
CHQ513 (CHQ513Q) /CSM/CH/CHQ5-A/CHQ513Q.Seq.d/                         44   0.003
FC-AA06 (FC-AA06Q) /CSM/FC/FC-AA/FC-AA06Q.Seq.d/                       38   0.19
VSE745 (VSE745Q) /CSM/VS/VSE7-B/VSE745Q.Seq.d/                         36   0.77
VSE415 (VSE415Q) /CSM/VS/VSE4-A/VSE415Q.Seq.d/                         36   0.77
VSC671 (VSC671Q) /CSM/VS/VSC6-C/VSC671Q.Seq.d/                         36   0.77
VSA740 (VSA740Q) /CSM/VS/VSA7-B/VSA740Q.Seq.d/                         36   0.77
VHO142 (VHO142Q) /CSM/VH/VHO1-B/VHO142Q.Seq.d/                         36   0.77

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40  0.005  9
BX511130|BX511130.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-7G2.    46  0.011  4
AC023795|AC023795.18 Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  0.050  5
AC116205|AC116205.4 Rattus norvegicus clone CH230-172M17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50  0.19  5
AL831805|AL831805.4 Oryza sativa chromosome 12, . BAC OSJNBa0085J02 of library OSJNBa  from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza  sativa (rice).    46  0.20  4
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38  0.22  5
BZ389639|BZ389639.1 EINEB70TF EI_10_12_KB Entamoeba invadens genomic clone EINEB70, DNA sequence.    46  0.63  1
AC113011|AC113011.4 Mus musculus clone RP23-173D22, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.63  1
BI744035|BI744035.1 kx54h08.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    46  0.63  1
AC090560|AC090560.2 Homo sapiens chromosome 11 clone RP11-429P16 map 11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38  0.80  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270365_18(AM270365|pid:none) Aspergillus niger contig An16c013...    74   5e-12
AM920427_1561(AM920427|pid:none) Penicillium chrysogenum Wiscons...    71   3e-11
AY168005_1(AY168005|pid:none) Emericella nidulans Ras-GAP gene, ...    71   3e-11
AP007151_1071(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    67   8e-10
U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA...    67   8e-10
CR382128_171(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    36   1.5
(P33277) RecName: Full=GTPase-activating protein; AltName: Full=...    35   3.4
CP001341_641(CP001341|pid:none) Arthrobacter chlorophenolicus A6...    33   7.6
T19096(T19096) hypothetical protein C08F8.6 - Caenorhabditis ele...    33   7.6
CP001113_496(CP001113|pid:none) Salmonella enterica subsp. enter...    33   9.9

 psg: 0.78  gvh: 0.53  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSB194 is nuc

>SSB194F.Seq
CAAGTTTACAATGANACCAAATATTTATTGATCACTGTACTTCGTTCATTGGCTTCAACT
CCTGGTACCGGTGATATGGGTGCATCTTTAGCAGAGGTTGCTAAACATGCTGCACTCAAT
AAGAATCAAGATATTGTAGATAACATTAAAAAGATATTGGTCAATGTAAAGAAACTCTCA
TTGGAAGGCTATTTGAAAGGTGAAGATGATAATTTCACTCAACTTCGTAAAGATATCGTA
GCGGAAT----------

>SSB194Z.Seq
----------CATCACATATCTATCTACACACATGGATACTACGTAAAATATCTCTCAAT
GTTCGTGAAATTGTGGTACCCAATGCAAGTGGTAGTAGTGATAAGAAATCAAAGAAGGAT
AAAGATAAAAACAAAGATAAAGACTCTTCCACTGATAAAGCAACTGGAAAGAAAGCTATG
GTTAAAAAGGGTCCTTTCAAATTTAGTTACAATCAAATGGAAAAGGATGGCTTAATCTGT
CAATCCGAAGTACCAGAAGATAGAAGATCAAACATATTCTTCTCTTTTAGTTCTGAATCT
CCTGGTATCTACGATGTCGTATTAATCTATAGAACTACCGCTGTCTCTGAAATTAGGTTA
CAATTAGATGAACTCTTGGAAATGCAATCAAATGGTCAAACTGAATACGAAACAACTTTC
TTTAAATTAAATGTTAATTTATTGTTATATGTTTTAAATAAAACATTTATTTCATAAATT
AATTATAGAATTTTTTTTAAAAAAAAAAAAAATAAAATAAAAAGAAGT

>SSB194P.Seq
CAAGTTTACAATGANACCAAATATTTATTGATCACTGTACTTCGTTCATTGGCTTCAACT
CCTGGTACCGGTGATATGGGTGCATCTTTAGCAGAGGTTGCTAAACATGCTGCACTCAAT
AAGAATCAAGATATTGTAGATAACATTAAAAAGATATTGGTCAATGTAAAGAAACTCTCA
TTGGAAGGCTATTTGAAAGGTGAAGATGATAATTTCACTCAACTTCGTAAAGATATCGTA
GCGGAAT----------CATCACATATCTATCTACACACATGGATACTACGTAAAATATC
TCTCAATGTTCGTGAAATTGTGGTACCCAATGCAAGTGGTAGTAGTGATAAGAAATCAAA
GAAGGATAAAGATAAAAACAAAGATAAAGACTCTTCCACTGATAAAGCAACTGGAAAGAA
AGCTATGGTTAAAAAGGGTCCTTTCAAATTTAGTTACAATCAAATGGAAAAGGATGGCTT
AATCTGTCAATCCGAAGTACCAGAAGATAGAAGATCAAACATATTCTTCTCTTTTAGTTC
TGAATCTCCTGGTATCTACGATGTCGTATTAATCTATAGAACTACCGCTGTCTCTGAAAT
TAGGTTACAATTAGATGAACTCTTGGAAATGCAATCAAATGGTCAAACTGAATACGAAAC
AACTTTCTTTAAATTAAATGTTAATTTATTGTTATATGTTTTAAATAAAACATTTATTTC
ATAAATTAATTATAGAATTTTTTTTAAAAAAAAAAAAAATAAAATAAAAAGAAGT