>SSB187 (SSB187Q) /CSM/SS/SSB1-D/SSB187Q.Seq.d/
XXXXXXXXXXACAAATCTGGGATCCCGCAGGACAAGAAAGATTTAGAACTATTACATCAT
CATACTATCGTGGTGCTCAAGGTATTATTCTTGTTTATGATTGCACTGATCAAGATTCAT
TTACAAATGTTAAACAATGGATGGGTGAAATCGATAGATATGCTTGCGAAAATGTTAATA
AACTTTTAGTTGGTAACAAAACTGATTTAGTAAACGAAAAAGTTGTCGATTCAAATCAAG
CTAAATCATTTGCAGAAAGTTATGGTATTCCATTCATTGAAACTAGTGCTAAGAATGCAA
CAAATGTTGAAGAATGTTTTATTTCAATGGCAAGAGATATTAAAAATGGACTTGCAGATA
TTCAAGAAACACCAAAACCAGACGAAGTTGATATCAAATCAAAAAATAAAACAAAGAGTG
GAGGTAAAAAATCCTTTTGTTAAATCAAATAACAATATCAAAAAAAAAAAATTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---QIWDPAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNK
LLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNGLADI
QETPKPDEVDIKSKNKTKSGGKKSFC*ik*qyqkkkikkkkkkkkkkkkkkk

Frame A:
---QIWDPAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNK
LLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNGLADI
QETPKPDEVDIKSKNKTKSGGKKSFC*ik*qyqkkkikkkkkkkkkkkkkkk


Frame B:
---ksgipqdkkdlellhhhtivvlkvlflfmialikihlqmlnngwvksidmlakmlin
f*lvtkli**tkklsiqiklnhlqkvmvfhslklvlrmqqmlknvlfqwqeilkmdlqif
kkhqnqtklisnqkikqrvevknpfvksnnnikkkklkkkkkkkkkkkkkkk


Frame C:
---nlgsrrtrki*nyyiiilswcsryyscl*lh*srfiykc*tmdg*nr*iclrkc**t
fsw*qn*fskrkscrfkss*iicrklwysih*n*c*ecnkc*rmfyfngkry*kwtcrys
rntktrrs*yqikk*nkewr*killlnqitiskkkn*kkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB187 (SSB187Q) /CSM/SS/SSB1-D/SSB187Q.Seq.d/                        761   0.0
SSA695 (SSA695Q) /CSM/SS/SSA6-D/SSA695Q.Seq.d/                        745   0.0
FC-BM04 (FC-BM04Q) /CSM/FC/FC-BM/FC-BM04Q.Seq.d/                      722   0.0
VSD323 (VSD323Q) /CSM/VS/VSD3-A/VSD323Q.Seq.d/                        202   4e-51
VSJ747 (VSJ747Q) /CSM/VS/VSJ7-B/VSJ747Q.Seq.d/                        129   5e-29
AHD475 (AHD475Q) /CSM/AH/AHD4-D/AHD475Q.Seq.d/                        129   5e-29
SLC626 (SLC626Q) /CSM/SL/SLC6-B/SLC626Q.Seq.d/                        121   1e-26
VFC510 (VFC510Q) /CSM/VF/VFC5-A/VFC510Q.Seq.d/                        100   4e-20
SSM886 (SSM886Q) /CSM/SS/SSM8-D/SSM886Q.Seq.d/                        100   4e-20
SSM603 (SSM603Q) /CSM/SS/SSM6-A/SSM603Q.Seq.d/                        100   4e-20

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.   109  8e-33  2
BG661470|BG661470.1 kx02c10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RAB1_LYMST Q05974 RAS-RELATED PROTEIN RAB-1A. ;, mRNA sequence.    62  1e-19  3
BE023346|BE023346.1 sm70g01.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-9289 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50  3e-14  3
AW397121|AW397121.1 sg67b08.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-1456 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50  4e-14  3
BG047357|BG047357.1 saa83d10.y1 Gm-c1063 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1063-955 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50  4e-14  3
BM885070|BM885070.1 sal94e07.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-3685 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50  5e-14  3
BM092508|BM092508.1 sah14f08.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1431 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50  5e-14  3
BE331049|BE331049.1 so93e09.y1 Gm-c1041 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1041-929 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50  6e-14  3
BE657372|BE657372.1 GM700001B20A10 Gm-r1070 Glycine max cDNA clone Gm-r1070-44 3', mRNA sequence.    50  9e-14  3
CA799953|CA799953.1 sat64g10.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-6451 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50  1e-13  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot...   182   5e-45
(Q39571) RecName: Full=GTP-binding protein YPTC1;  &DQ222936_1(D...   178   6e-44
DQ222937_1(DQ222937|pid:none) Chlamydomonas incerta YptC1 (yptC1...   178   6e-44
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2...   177   1e-43
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro...   177   1e-43
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090...   177   1e-43
(Q05974) RecName: Full=Ras-related protein Rab-1A;  &S38339(S383...   177   2e-43
AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos...   177   2e-43
(Q01890) RecName: Full=Ras-like GTP-binding protein YPT1;  &JC53...   176   2e-43
S06147(S06147;S03189)GTP-binding protein rab1B - rat                  176   2e-43

 psg: 0.75  gvh: 0.44  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSB187 is cyt

>SSB187Z.Seq
----------ACAAATCTGGGATCCCGCAGGACAAGAAAGATTTAGAACTATTACATCAT
CATACTATCGTGGTGCTCAAGGTATTATTCTTGTTTATGATTGCACTGATCAAGATTCAT
TTACAAATGTTAAACAATGGATGGGTGAAATCGATAGATATGCTTGCGAAAATGTTAATA
AACTTTTAGTTGGTAACAAAACTGATTTAGTAAACGAAAAAGTTGTCGATTCAAATCAAG
CTAAATCATTTGCAGAAAGTTATGGTATTCCATTCATTGAAACTAGTGCTAAGAATGCAA
CAAATGTTGAAGAATGTTTTATTTCAATGGCAAGAGATATTAAAAATGGACTTGCAGATA
TTCAAGAAACACCAAAACCAGACGAAGTTGATATCAAATCAAAAAATAAAACAAAGAGTG
GAGGTAAAAAATCCTTTTGTTAAATCAAATAACAATATCAAAAAAAAAAAATTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA