>SSB183 (SSB183Q) /CSM/SS/SSB1-D/SSB183Q.Seq.d/
CAATGGTGTTTTTGATCAATATAGTTCAGCAACATCATTTGTATATTCAAATAAGAGTAG
TGTCCCACATACATCACCAGGAGATGGAAAACCTTATGCAGGAATGAATGGTTACATTAC
AATTAATAGCGAAGCATTTATTCCACCAAATAGTGATGATAATAGTAGTAATAGTAATAA
TAATAATAACAATAACAATAATAGTAATGGCAATTCAAATGAACCATACATTAATTTCTT
ATTATATAGAATGAATGAAGTTAAATATATAGGTGXXXXXXXXXXCAAACAAAGAATCAA
ACAGCCAAATTGTTAATGTTTAGATCATTCATTTGGGTATTATTAGGTAGCGCAGTTTGT
TCATTCATTATTCTTATGGCAGAGATTATTGTCACTTGGGCAACCTCTTATGAATATTCT
GCTCAAACCAGTTGGGTCGTAGAAGTATCTTGGGGTGTAAGTTACTTTGTAGTTTTAGTT
TCAATTTGTTGGATTTGGAAACCAAATGCAAATAATCAAAAGTTTGCCTACTCTGAATTG
GCTGATCAAGATGATGATATAGGATTAGAATCCATTGATGGTCTAAGTCATAGAGGTCAC
AAAAATAATACCAACAATAACAATGGAACTAGACATGATATCATTGATAATGAAAATACT
ATTGAAAGTATTGATGGTCAAGCAAATACTTTTACAATTCAAGATGAATATGAAGATCAA
GATTTACATGATGAAAAAGTTGAAATTGCTGATATGTTCAAAAATTTATAAATTTATAAA
AAAAAAATAAAGAAA

NGVFDQYSSATSFVYSNKSSVPHTSPGDGKPYAGMNGYITINSEAFIPPNSDDNSSNSNN
NNNNNNNSNGNSNEPYINFLLYRMNEVKYIG---

---QTKNQTAKLLMFRSFIWVLLGSAVCSFIILMAEIIVTWATSYEYSAQTSWVVEVSWG
VSYFVVLVSICWIWKPNANNQKFAYSELADQDDDIGLESIDGLSHRGHKNNTNNNNGTRH
DIIDNENTIESIDGQANTFTIQDEYEDQDLHDEKVEIADMFKNL*iykkkikk

Frame A:
qwcf*si*fsniicifk*e*cptyitrrwktlcrnewlhyn**rsiystk**********
***q*q***wqfk*tih*flii*ne*s*iyr---

---QTKNQTAKLLMFRSFIWVLLGSAVCSFIILMAEIIVTWATSYEYSAQTSWVVEVSWG
VSYFVVLVSICWIWKPNANNQKFAYSELADQDDDIGLESIDGLSHRGHKNNTNNNNGTRH
DIIDNENTIESIDGQANTFTIQDEYEDQDLHDEKVEIADMFKNL*iykkkikk

Frame B:
NGVFDQYSSATSFVYSNKSSVPHTSPGDGKPYAGMNGYITINSEAFIPPNSDDNSSNSNN
NNNNNNNSNGNSNEPYINFLLYRMNEVKYIG---

---kqrikqpnc*cldhsfgyy*vaqfvhslflwqrllslgqplmnillkpvgs*kylgv
*vtl*f*fqfvgfgnqmqiikslptlnwlikmmi*d*nplmv*vievtkiiptitmeldm
islimkillkvlmvkqillqfkmnmkikiymmkklkllicskiykfikkk*r

Frame C:
mvflinivqqhhlyiqirvvshihhqemenlmqe*mvtlqliakhlfhqivmiivvivii
iititiivmaiqmnhtlisyyie*mklni*v---

---nkesnsqivnv*iihlgiir*rslfihysygrdychlgnll*ifcsnqlgrrsilgc
kllcsfsfnlldletkck*skvcll*ig*sr**yririh*wsks*rsqk*yqq*qwn*t*
yh***kyy*ky*wsskyfynsr*i*rsrft**ks*nc*yvqkfinl*kknke

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB183 (SSB183Q) /CSM/SS/SSB1-D/SSB183Q.Seq.d/                       1068   0.0
AFO820 (AFO820Q) /CSM/AF/AFO8-A/AFO820Q.Seq.d/                        839   0.0
SSD508 (SSD508Q) /CSM/SS/SSD5-A/SSD508Q.Seq.d/                        722   0.0
VFJ248 (VFJ248Q) /CSM/VF/VFJ2-B/VFJ248Q.Seq.d/                        313   2e-84
SFD669 (SFD669Q) /CSM/SF/SFD6-C/SFD669Q.Seq.d/                        313   2e-84
AFO420 (AFO420Q) /CSM/AF/AFO4-A/AFO420Q.Seq.d/                        274   2e-72
AFI624 (AFI624Q) /CSM/AF/AFI6-A/AFI624Q.Seq.d/                         40   0.050
VSG391 (VSG391Q) /CSM/VS/VSG3-D/VSG391Q.Seq.d/                         38   0.20
VSI556 (VSI556Q) /CSM/VS/VSI5-C/VSI556Q.Seq.d/                         36   0.79
VFK277 (VFK277Q) /CSM/VF/VFK2-D/VFK277Q.Seq.d/                         36   0.79

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL356280|AL356280.21 Human DNA sequence from clone RP11-82O2 on chromosome 1 Contains  part of a novel gene, part of a novel gene (Tera), a pseudogene  similar to DNAJ protein, ESTs, STSs and GSSs.    40  0.024  8
BH732407|BH732407.1 BOMBR78TF BO_2_3_KB Brassica oleracea genomic clone BOMBR78, DNA sequence.    40  0.046  2
AF190641|AF190641.1 Homo sapiens chromosome 21 PAC 704P23131 map 21q22.1, complete sequence.    36  0.15  4
CC082421|CC082421.1 CSU-K33r.15K21.T7 CSU-K33r Aedes aegypti genomic clone CSU-K33r.15K21, DNA sequence.    42  0.18  2
AC016015|AC016015.3 Homo sapiens clone RP11-26J20, WORKING DRAFT SEQUENCE, 31 unordered pieces.    34  0.19  6
AF003136|AF003136.2 Caenorhabditis elegans cosmid F28B3, complete sequence.    40  0.52  2
AC126887|AC126887.4 Rattus norvegicus clone CH230-115C14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.65  1
AC096789|AC096789.6 Rattus norvegicus clone CH230-6J11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.65  1
AL591602|AL591602.7 Human DNA sequence from clone RP5-1092E23 on chromosome 1.    36  0.71  6
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.    36  0.98  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008217_1072(AP008217|pid:none) Oryza sativa (japonica cultivar...    62   2e-08
AK221666_1(AK221666|pid:none) Arabidopsis thaliana mRNA for hypo...    58   3e-07
AC157375_12(AC157375|pid:none) Medicago truncatula chromosome 2 ...    58   4e-07
BC166372_1(BC166372|pid:none) Xenopus tropicalis hypothetical pr...    57   9e-07
CR954216_250(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    55   3e-06
CR382127_585(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    54   4e-06
AK011959_1(AK011959|pid:none) Mus musculus 10 days embryo whole ...    54   6e-06
BC031488_1(BC031488|pid:none) Mus musculus transmembrane protein...    54   6e-06
AL808104_3(AL808104|pid:none) Mouse DNA sequence from clone RP23...    54   6e-06
(Q8BKU8) RecName: Full=Transmembrane protein 87B; Flags: Precurs...    54   6e-06

 psg: 0.75  gvh: 0.32  alm: 0.21  top: 0.20  tms: 0.13  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for SSB183 is end

>SSB183F.Seq
CAATGGTGTTTTTGATCAATATAGTTCAGCAACATCATTTGTATATTCAAATAAGAGTAG
TGTCCCACATACATCACCAGGAGATGGAAAACCTTATGCAGGAATGAATGGTTACATTAC
AATTAATAGCGAAGCATTTATTCCACCAAATAGTGATGATAATAGTAGTAATAGTAATAA
TAATAATAACAATAACAATAATAGTAATGGCAATTCAAATGAACCATACATTAATTTCTT
ATTATATAGAATGAATGAAGTTAAATATATAGGTG----------

>SSB183Z.Seq
----------CAAACAAAGAATCAAACAGCCAAATTGTTAATGTTTAGATCATTCATTTG
GGTATTATTAGGTAGCGCAGTTTGTTCATTCATTATTCTTATGGCAGAGATTATTGTCAC
TTGGGCAACCTCTTATGAATATTCTGCTCAAACCAGTTGGGTCGTAGAAGTATCTTGGGG
TGTAAGTTACTTTGTAGTTTTAGTTTCAATTTGTTGGATTTGGAAACCAAATGCAAATAA
TCAAAAGTTTGCCTACTCTGAATTGGCTGATCAAGATGATGATATAGGATTAGAATCCAT
TGATGGTCTAAGTCATAGAGGTCACAAAAATAATACCAACAATAACAATGGAACTAGACA
TGATATCATTGATAATGAAAATACTATTGAAAGTATTGATGGTCAAGCAAATACTTTTAC
AATTCAAGATGAATATGAAGATCAAGATTTACATGATGAAAAAGTTGAAATTGCTGATAT
GTTCAAAAATTTATAAATTTATAAAAAAAAAATAAAGAAA

>SSB183P.Seq
CAATGGTGTTTTTGATCAATATAGTTCAGCAACATCATTTGTATATTCAAATAAGAGTAG
TGTCCCACATACATCACCAGGAGATGGAAAACCTTATGCAGGAATGAATGGTTACATTAC
AATTAATAGCGAAGCATTTATTCCACCAAATAGTGATGATAATAGTAGTAATAGTAATAA
TAATAATAACAATAACAATAATAGTAATGGCAATTCAAATGAACCATACATTAATTTCTT
ATTATATAGAATGAATGAAGTTAAATATATAGGTG----------CAAACAAAGAATCAA
ACAGCCAAATTGTTAATGTTTAGATCATTCATTTGGGTATTATTAGGTAGCGCAGTTTGT
TCATTCATTATTCTTATGGCAGAGATTATTGTCACTTGGGCAACCTCTTATGAATATTCT
GCTCAAACCAGTTGGGTCGTAGAAGTATCTTGGGGTGTAAGTTACTTTGTAGTTTTAGTT
TCAATTTGTTGGATTTGGAAACCAAATGCAAATAATCAAAAGTTTGCCTACTCTGAATTG
GCTGATCAAGATGATGATATAGGATTAGAATCCATTGATGGTCTAAGTCATAGAGGTCAC
AAAAATAATACCAACAATAACAATGGAACTAGACATGATATCATTGATAATGAAAATACT
ATTGAAAGTATTGATGGTCAAGCAAATACTTTTACAATTCAAGATGAATATGAAGATCAA
GATTTACATGATGAAAAAGTTGAAATTGCTGATATGTTCAAAAATTTATAAATTTATAAA
AAAAAAATAAAGAAA