NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB177
Library SS
(Link to library)
Clone ID SSB177
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSB177F
(Link to Original site)
Representative DNA sequence 
>SSB177 (SSB177Q) /CSM/SS/SSB1-D/SSB177Q.Seq.d/
TTTAATTTAATAGACAAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAAT
AAAATTTTATATAAATAAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTT
TATATTCATTTTTTCACTTGGTGAAAGTACATTGANTANACCAAATTTTTATTATAGAAT
TGATTGGGAAAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGT
CAATACAAATGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAA
ATCATACCTTTTTTXXXXXXXXXX
sequence update 1999. 1.14
Translated Amino Acid sequence 
li**tnkqtkqtdni*nk*IKFYINKKKMIKLFCISAILFIFIFSLGESTLXXPNFYYRI
DWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLF---
Translated Amino Acid sequence (All Frames) 
Frame A:
fnlidk*tnkanrqyik*inkilyk*kkndkiilyisnivyihfftw*kyixxtkfll*n
*lgkhkly*ssmstifstksqyk*kfncnfkfhlprwl**iipf---


Frame B:
li**tnkqtkqtdni*nk*IKFYINKKKMIKLFCISAILFIFIFSLGESTLXXPNFYYRI
DWENINCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLF---


Frame C:
*fnrqinkqskqtiykink*nfi*ikkk**nyfvyqqyclysffhlvkvh*xxqifiiel
igkt*ivlelhvhniqhkksiqmkiqlqf*vsftqmaiinhtf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL202 (SSL202Q) /CSM/SS/SSL2-A/SSL202Q.Seq.d/                        428   e-119
SSB765 (SSB765Q) /CSM/SS/SSB7-C/SSB765Q.Seq.d/                        428   e-119
SSB177 (SSB177Q) /CSM/SS/SSB1-D/SSB177Q.Seq.d/                        428   e-119
SLF169 (SLF169Q) /CSM/SL/SLF1-C/SLF169Q.Seq.d/                        428   e-119
SLA503 (SLA503Q) /CSM/SL/SLA5-A/SLA503Q.Seq.d/                        428   e-119
CFC881 (CFC881Q) /CSM/CF/CFC8-D/CFC881Q.Seq.d/                        428   e-119
CFC889 (CFC889Q) /CSM/CF/CFC8-D/CFC889Q.Seq.d/                        416   e-116
AFM748 (AFM748Q) /CSM/AF/AFM7-B/AFM748Q.Seq.d/                        416   e-116
AHO755 (AHO755Q) /CSM/AH/AHO7-C/AHO755Q.Seq.d/                        404   e-112
SSL481 (SSL481Q) /CSM/SS/SSL4-D/SSL481Q.Seq.d/                        212   2e-54
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   428  e-116  1
CB293485|CB293485.1 UCRCS01_06ag01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ag01, mRNA sequence.    42  0.12  2
AL596024|AL596024.5 Zebrafish DNA sequence from clone XX-199M19.    36  0.92  6
AC109366|AC109366.6 Rattus norvegicus clone CH230-3D19, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.0  1
AC108013|AC108013.5 Homo sapiens BAC clone RP13-538M20 from 4, complete sequence.    40  1.4  4
AC092883|AC092883.10 Homo sapiens chromosome 12 clone RP11-725F23, WORKING DRAFT SEQUENCE, 13 unordered pieces.    36  2.5  5
AC102891|AC102891.2 Mus musculus clone RP24-363B22, WORKING DRAFT SEQUENCE, 38 unordered pieces.    42  4.0  1
CB291576|CB291576.1 UCRCS01_03af02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03af02, mRNA sequence.    42  4.0  1
CB293416|CB293416.1 UCRCS01_06ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac11, mRNA sequence.    42  4.0  1
CB291442|CB291442.1 UCRCS01_02dg03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02dg03, mRNA sequence.    42  4.0  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   123   2e-27
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    76   4e-13
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    47   2e-04
protein update 2009. 1.26
PSORT 

 psg: 0.86  gvh: 0.57  alm: 0.20  top: 0.07  tms: 0.07  mit: 0.30  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall

>> prediction for SSB177 is cyt
5' end seq. ID SSB177F
5' end seq. 
>SSB177F.Seq
TTTAATTTAATAGACAAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAAT
AAAATTTTATATAAATAAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTT
TATATTCATTTTTTCACTTGGTGAAAGTACATTGANTANACCAAATTTTTATTATAGAAT
TGATTGGGAAAACATAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGT
CAATACAAATGAAAATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAA
ATCATACCTTTTTT----------
Length of 5' end seq. 314
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -