>SSB171 (SSB171Q) /CSM/SS/SSB1-C/SSB171Q.Seq.d/
ANAAAAATCAAATTAAAAATGGAATCAAANAGAAAAGCCAATTTAGCAACAGAGAATGAC
TCAAAGAAACAACAAAAGTTAACCGAGGTGTCAGATGTCAAAACAATGGATTCAACATCC
AATTCTTCAATTCCATTTGATGGAAGCCAATTGTTATTGAAATTAGTTAATTCTCGTGCC
ATGTCAATCAAAACCAGAGATGAAGTTATTTTCTCTTGTGAACGTAATGATAATCTTACA
AAAGTTTTCAAAGGTXXXXXXXXXX

XKIKLKMESXRKANLATENDSKKQQKLTEVSDVKTMDSTSNSSIPFDGSQLLLKLVNSRA
MSIKTRDEVIFSCERNDNLTKVFK---

Frame A:
XKIKLKMESXRKANLATENDSKKQQKLTEVSDVKTMDSTSNSSIPFDGSQLLLKLVNSRA
MSIKTRDEVIFSCERNDNLTKVFK---


Frame B:
xksn*kwnqxekpi*qqrmtqrnnks*prcqmskqwiqhpilqfhlmeancy*n*lilvp
cqskpemklfslvnvmiilqkfsk---


Frame C:
knqikngikxksqfsnre*lkettkvnrgvrcqnngfniqffnsi*wkpivieis*fsch
vnqnqr*syfll*t***syksfqr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF847 (VFF847Q) /CSM/VF/VFF8-B/VFF847Q.Seq.d/                        496   e-140
SSB171 (SSB171Q) /CSM/SS/SSB1-C/SSB171Q.Seq.d/                        496   e-140
VSG122 (VSG122Q) /CSM/VS/VSG1-A/VSG122Q.Seq.d/                         36   0.25
VHO696 (VHO696Q) /CSM/VH/VHO6-D/VHO696Q.Seq.d/                         34   1.00
VHM811 (VHM811Q) /CSM/VH/VHM8-A/VHM811Q.Seq.d/                         34   1.00
VHI572 (VHI572Q) /CSM/VH/VHI5-C/VHI572Q.Seq.d/                         34   1.00
VHI226 (VHI226Q) /CSM/VH/VHI2-B/VHI226Q.Seq.d/                         34   1.00
VHH501 (VHH501Q) /CSM/VH/VHH5-A/VHH501Q.Seq.d/                         34   1.00
VHD785 (VHD785Q) /CSM/VH/VHD7-D/VHD785Q.Seq.d/                         34   1.00
VHB534 (VHB534Q) /CSM/VH/VHB5-B/VHB534Q.Seq.d/                         34   1.00

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE007639|AE007639.1 Clostridium acetobutylicum ATCC824 section 127 of 356 of the complete genome.    38  0.35  2
AC095923|AC095923.6 Rattus norvegicus clone CH230-10I15, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  0.43  3
AC091976|AC091976.2 Homo sapiens chromosome 5 clone RP11-528F16, complete sequence.    32  0.56  5
AC007747|AC007747.1 Homo sapiens clone NH0521D03A, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44  0.81  1
AQ079829|AQ079829.1 CIT-HSP-2361N22.TR CIT-HSP Homo sapiens genomic clone 2361N22, DNA sequence.    44  0.81  1
AC126881|AC126881.3 Rattus norvegicus clone CH230-258F22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.1  2
BZ933753|BZ933753.1 CH240_89M23.TJ CHORI-240 Bos taurus genomic clone CH240_89M23, genomic survey sequence.    38  2.2  2
AC128997|AC128997.6 Rattus norvegicus clone CH230-10I24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  3.2  1
AC068959|AC068959.2 Homo sapiens clone RP11-12O10, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42  3.2  1
U19737|U19737.1 Flaveria pringlei carbonic anhydrase mRNA, complete cds.    42  3.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O35309) RecName: Full=N-myc-interactor;          Short=Nmi; Alt...    32   6.7
BT081266_1(BT081266|pid:none) Caligus clemensi clone ccle-evs-51...    32   6.7
FM992689_312(FM992689|pid:none) Candida dubliniensis CD36 chromo...    32   8.8
AE004092_1404(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ...    32   8.8
AM295007_297(AM295007|pid:none) Streptococcus pyogenes Manfredo ...    32   8.8

 psg: 0.55  gvh: 0.49  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSB171 is cyt

>SSB171F.Seq
ANAAAAATCAAATTAAAAATGGAATCAAANAGAAAAGCCAATTTAGCAACAGAGAATGAC
TCAAAGAAACAACAAAAGTTAACCGAGGTGTCAGATGTCAAAACAATGGATTCAACATCC
AATTCTTCAATTCCATTTGATGGAAGCCAATTGTTATTGAAATTAGTTAATTCTCGTGCC
ATGTCAATCAAAACCAGAGATGAAGTTATTTTCTCTTGTGAACGTAATGATAATCTTACA
AAAGTTTTCAAAGGT----------