>SSB149 (SSB149Q) /CSM/SS/SSB1-C/SSB149Q.Seq.d/
XXXXXXXXXXTGAATTACAAGATATGATNAATGAAGTCGACGCTGATGGTAATGGTAACA
TTGATTTCCCAGAATTTTTAACCATGATGGTTTGTAAAATGCAAGACANTGATACTGAAG
AAGAAATCCGTGAAGCATTCAAAGTTTTCGATAAAGACGGTAACGGTTAAATTTTAGCTG
CTGAANTTAGACACGTTATGACCAGTTTTGGTGAAAAACTTACCAACGAAGAAGTTGATG
AAATGATTAGAGAAGCTGATTTGGATGGCGATGGTCAAGTTAACTATGACGAATTTGTTA
AAATGATGATTGTTAGAAATTAAGAAAATTTAATATTAAAAAAAAACAAAAACCTTG

---ELQDMXNEVDADGNGNIDFPEFLTMMVCKMQDXDTEEEIREAFKVFDKDGNG*ilaa
exrhvmtsfgekltneevdemireadldgdgqvnydefvkmmivrn*enlilkknknl

Frame A:
---ELQDMXNEVDADGNGNIDFPEFLTMMVCKMQDXDTEEEIREAFKVFDKDGNG*ilaa
exrhvmtsfgekltneevdemireadldgdgqvnydefvkmmivrn*enlilkknknl


Frame B:
---nyki*xmkstlmvmvtlisqnf*p*wfvkcktxilkkksvkhskfsiktvtvkf*ll
xldtl*pvlvknlptkklmk*lekliwmamvkltmtnllk**lleikki*y*kktktl


Frame C:
---itrydx*srr*w*w*h*fprifnhdgl*narx*y*rrnp*siqsfr*rr*rlnfsc*
x*trydqfw*ktyqrrs**nd*rs*fgwrwss*l*ric*nddc*klrkfnikkkqkp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB149 (SSB149Q) /CSM/SS/SSB1-C/SSB149Q.Seq.d/                        630   e-180
VSE268 (VSE268Q) /CSM/VS/VSE2-C/VSE268Q.Seq.d/                        575   e-163
VSD126 (VSD126Q) /CSM/VS/VSD1-B/VSD126Q.Seq.d/                        575   e-163
VSD124 (VSD124Q) /CSM/VS/VSD1-A/VSD124Q.Seq.d/                        575   e-163
SSM156 (SSM156Q) /CSM/SS/SSM1-C/SSM156Q.Seq.d/                        575   e-163
SSM151 (SSM151Q) /CSM/SS/SSM1-C/SSM151Q.Seq.d/                        575   e-163
SSL632 (SSL632Q) /CSM/SS/SSL6-B/SSL632Q.Seq.d/                        575   e-163
SSL130 (SSL130Q) /CSM/SS/SSL1-B/SSL130Q.Seq.d/                        575   e-163
SSK610 (SSK610Q) /CSM/SS/SSK6-A/SSK610Q.Seq.d/                        575   e-163
SSK102 (SSK102Q) /CSM/SS/SSK1-A/SSK102Q.Seq.d/                        575   e-163

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M13009|M13009.1 D.discoideum calmodulin mRNA, partial cds.       575  e-160  1
M64089|M64089.1 Dictyostelium discoideum calmodulin (calA) gene, complete cds.   440  e-156  2
CB930182|CB930182.1 ri71h04.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5' similar to SW:CALM_DROME P07181 CALMODULIN. [8] SW:CALM_DROME TR:O02367 TR:O96081 TR:O97341 TR:O16305 TR:Q9V3T4 TR:Q9UB37 ;, mRNA sequence.   107  5e-38  2
CB929995|CB929995.1 ri69d12.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5' similar to SW:CALM_DROME P07181 CALMODULIN. [8] SW:CALM_DROME TR:O02367 TR:O96081 TR:O97341 TR:O16305 TR:Q9V3T4 TR:Q9UB37 ;, mRNA sequence.   100  1e-35  2
CB930555|CB930555.1 ri56c01.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5' similar to SW:CALM_DROME P07181 CALMODULIN. [8] SW:CALM_DROME TR:O02367 TR:O96081 TR:O97341 TR:O16305 TR:Q9V3T4 TR:Q9UB37 ;, mRNA sequence.   107  1e-35  2
CB073854|CB073854.1 taa21c03.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar to TR:O96102 O96102 CALMODULIN. ;, mRNA sequence.   109  2e-34  2
D10521|D10521.1 T.pyriformis mRNA for calmodulin.                121  2e-34  2
X52242|X52242.1 T.thermophila mRNA for calmodulin.               103  6e-33  3
BG661364|BG661364.1 kx01a01.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:CALM_DROME P07181 CALMODULIN. [8] SW:CALM_DROME TR:O02367 TR:O96081 TR:O97341 TR:O16305 TR:Q9V3T4 TR:Q9UB37 ;, mRNA sequence.    76  1e-32  3
BM394651|BM394651.1 50072-2-5-C06.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.   103  1e-31  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M13009_1(M13009|pid:none) D.discoideum calmodulin mRNA, partial ...   189   3e-47
(Q95NR9) RecName: Full=Calmodulin;          Short=CaM;  &AB06318...   170   2e-41
CP001574_245(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   170   2e-41
AY894058_1(AY894058|pid:none) Synthetic construct Homo sapiens c...   169   3e-41
AB222133_1(AB222133|pid:none) Pan troglodytes verus calm1 mRNA f...   169   4e-41
EU117990_1(EU117990|pid:none) Crassostrea gigas clone CBSN2241 c...   169   4e-41
AY891413_1(AY891413|pid:none) Synthetic construct Homo sapiens c...   169   4e-41
DQ457005_1(DQ457005|pid:none) Synthetic construct plasmid pN1-4n...   169   4e-41
I49567(I49567) calmodulin - mouse  &M19381_1(M19381|pid:none)         169   4e-41
CR859751_1(CR859751|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1...   169   4e-41

 psg: 0.75  gvh: 0.47  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSB149 is nuc

>SSB149Z.Seq
----------TGAATTACAAGATATGATNAATGAAGTCGACGCTGATGGTAATGGTAACA
TTGATTTCCCAGAATTTTTAACCATGATGGTTTGTAAAATGCAAGACANTGATACTGAAG
AAGAAATCCGTGAAGCATTCAAAGTTTTCGATAAAGACGGTAACGGTTAAATTTTAGCTG
CTGAANTTAGACACGTTATGACCAGTTTTGGTGAAAAACTTACCAACGAAGAAGTTGATG
AAATGATTAGAGAAGCTGATTTGGATGGCGATGGTCAAGTTAACTATGACGAATTTGTTA
AAATGATGATTGTTAGAAATTAAGAAAATTTAATATTAAAAAAAAACAAAAACCTTG