SSB148
Library SS
(Link to library)
Clone ID SSB148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01623-1
Original site URL
Representative seq. ID SSB148Z
(Link to Original site)
Representative DNA sequence
>SSB148 (SSB148Q) /CSM/SS/SSB1-B/SSB148Q.Seq.d/
XXXXXXXXXXATTGGTGGTTCTATTTTCTCTCAAGAGGGTCAATTATATNTTCTACAGTT
GTCAATTCTTAAATAATGAAGCGGTTGCTGGTTCATCAGTTTATTGTTTAAATTCAAATA
TAAACTTTAGTAATATGACATTTAACAATAATACCGATTNATCAATACCAACTCCAAATG
GTATTGGTTGTGGTTCTGGTAAAGTTTGTTCCATTCAAGGTGATCAACAATTTCAAAATA
GTTGTTCCTATGATTATCAACCTGATAAACCATCATTACTATNTCCTGGTGAAGTGGCTG
CAATCGTAATTTGTGTTATAATTGGTGCTGCNATCATTGCAACTGTTTTGATTTTAATCA
TTCGTAAAATTAGTAGAGGAAGAAATGGTTATTCCAAAATTGTTAATGGTTAAACATTTA
CTACTCGACTTTTTATAAAAAAAAAAAAAAAAAATTAAAAAAAATTATAATATTATATAA
ATATTTTATATGAAAAAGGTCTTTTTTTTTTCCATCACTAGATATTAAATAAATAAAAAA
AATATTAAAAAAAAACA
sequence update 1997. 8.15
Translated Amino Acid sequence
---LVVLFSLKRVNYXFYSCQFLNNEAVAGSSVYCLNSNINFSNMTFNNNTDXSIPTPNG
IGCGSGKVCSIQGDQQFQNSCSYDYQPDKPSLLXPGEVAAIVICVIIGAAIIATVLILII
RKISRGRNGYSKIVNG*tfttrlfikkkkkn*kkl*yyinilyekglfffhh*ilnk*kk
y*kkt


Translated Amino Acid sequence (All Frames)
Frame A:
---LVVLFSLKRVNYXFYSCQFLNNEAVAGSSVYCLNSNINFSNMTFNNNTDXSIPTPNG
IGCGSGKVCSIQGDQQFQNSCSYDYQPDKPSLLXPGEVAAIVICVIIGAAIIATVLILII
RKISRGRNGYSKIVNG*tfttrlfikkkkkn*kkl*yyinilyekglfffhh*ilnk*kk
y*kkt


Frame B:
---wwfyflsrgsiixstvvns*imkrllvhqfiv*iqi*tlvi*hltiipixqyqlqmv
lvvvlvkfvpfkvinnfkivvpmiinlinhhyyxlvkwlqs*fvl*lvlxslqlf*f*sf
vklveeemvipkllmvkhllldfl*kkkkkikknynii*ifymkkvfffsitry*inkkn
ikkk


Frame C:
---ggsifsqegqlyxlqlsilk**sgcwfisllfkfkykl**ydi*q*yrxintnskwy
wlwfw*slfhsr*stisk*lfl*lst**tiitxsw*sgcnrnlcynwccxhcncfdfnhs
*n**rkkwlfqnc*wlniyystfykkkkkklkkiiilykyfi*krsfffpsldik*ikki
lkkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSB148 (SSB148Q) /CSM/SS/SSB1-B/SSB148Q.Seq.d/ 821 0.0
VSE381 (VSE381Q) /CSM/VS/VSE3-D/VSE381Q.Seq.d/ 805 0.0
SSC874 (SSC874Q) /CSM/SS/SSC8-D/SSC874Q.Seq.d/ 777 0.0
VHN592 (VHN592Q) /CSM/VH/VHN5-D/VHN592Q.Seq.d/ 38 0.14
VHI608 (VHI608Q) /CSM/VH/VHI6-A/VHI608Q.Seq.d/ 38 0.14
FC-BR18 (FC-BR18Q) /CSM/FC/FC-BR/FC-BR18Q.Seq.d/ 38 0.14
CHF293 (CHF293Q) /CSM/CH/CHF2-D/CHF293Q.Seq.d/ 38 0.14
VSI520 (VSI520Q) /CSM/VS/VSI5-A/VSI520Q.Seq.d/ 36 0.55
VSG569 (VSG569Q) /CSM/VS/VSG5-C/VSG569Q.Seq.d/ 36 0.55
VSD314 (VSD314Q) /CSM/VS/VSD3-A/VSD314Q.Seq.d/ 36 0.55

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY223820|AY223820.1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) (NFKB1) gene, complete cds. 34 0.085 4
BZ175628|BZ175628.1 CH230-348M8.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-348M8, DNA sequence. 48 0.11 1
AC106290|AC106290.4 Rattus norvegicus clone CH230-70K10, WORKING DRAFT SEQUENCE, 5 unordered pieces. 48 0.11 1
R68658|R68658.1 yi14c06.s1 Soares placenta Nb2HP Homo sapiens cDNA clone IMAGE:139210 3', mRNA sequence. 40 0.19 2
AF213884|AF213884.1 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (NFKB1) gene, complete cds. 34 0.28 4
AC021120|AC021120.6 Homo sapiens clone RP11-347O8, complete sequence. 34 0.29 4
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence. 36 0.29 6
AC084297|AC084297.3 Homo sapiens BAC clone RP11-44H9 from 2, complete sequence. 46 0.33 3
BH346715|BH346715.1 CH230-54D1.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-54D1, DNA sequence. 46 0.45 1
BE850668|BE850668.1 uw20h10.y1 Soares mouse 3NbMS Mus musculus cDNA clone IMAGE:3417283 5', mRNA sequence. 46 0.45 1
dna update 2003. 7.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 567,517,145
protein update 2009. 6. 8
PSORT

psg: 0.84 gvh: 0.41 alm: 0.10 top: 1.00 tms: 0.07 mit: 0.33 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.14 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSB148 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB148Z
3' end seq.
>SSB148Z.Seq
----------ATTGGTGGTTCTATTTTCTCTCAAGAGGGTCAATTATATNTTCTACAGTT
GTCAATTCTTAAATAATGAAGCGGTTGCTGGTTCATCAGTTTATTGTTTAAATTCAAATA
TAAACTTTAGTAATATGACATTTAACAATAATACCGATTNATCAATACCAACTCCAAATG
GTATTGGTTGTGGTTCTGGTAAAGTTTGTTCCATTCAAGGTGATCAACAATTTCAAAATA
GTTGTTCCTATGATTATCAACCTGATAAACCATCATTACTATNTCCTGGTGAAGTGGCTG
CAATCGTAATTTGTGTTATAATTGGTGCTGCNATCATTGCAACTGTTTTGATTTTAATCA
TTCGTAAAATTAGTAGAGGAAGAAATGGTTATTCCAAAATTGTTAATGGTTAAACATTTA
CTACTCGACTTTTTATAAAAAAAAAAAAAAAAAATTAAAAAAAATTATAATATTATATAA
ATATTTTATATGAAAAAGGTCTTTTTTTTTTCCATCACTAGATATTAAATAAATAAAAAA
AATATTAAAAAAAAACA
Length of 3' end seq. 547
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -