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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB127
Library SS
(Link to library)
Clone ID SSB127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SSB127Z
(Link to Original site)
Representative DNA sequence 
>SSB127 (SSB127Q) /CSM/SS/SSB1-B/SSB127Q.Seq.d/
XXXXXXXXXXAAGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTG
CTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATA
CATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAG
TTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAA
CCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATA
GTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGG
GTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAG
TTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGAT
CTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCT
AATTGTAACTAGTTCTAGATCGCGAGCGGCGCACCGCTTGAGCTCCAATT
sequence update 1997. 7. 5
Translated Amino Acid sequence 
---SYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLV
VGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWG
IKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*
l*lvldrerrta*api
Translated Amino Acid sequence (All Frames) 
Frame A:
---SYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLV
VGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWG
IKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknnnf*
l*lvldrerrta*api


Frame B:
---vmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*l
lvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv
*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikikiiisn
cn*f*iasgaplelq


Frame C:
---lc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfsc
wlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgy
krlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*k**fli
vtssrsraahrlssn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB127 (SSB127Q) /CSM/SS/SSB1-B/SSB127Q.Seq.d/                        991   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        987   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        987   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        987   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        987   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        987   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        987   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        987   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                        987   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                        987   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051994) Dictyostelium discoideum slug cDNA, clone SSB127.      991   0.0    2
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   987   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.      987   0.0    1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.      987   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.      987   0.0    1
(AU039554) Dictyostelium discoideum slug cDNA, clone SLE742.      987   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.      987   0.0    1
(AU039170) Dictyostelium discoideum slug cDNA, clone SSM471.      987   0.0    1
(AU038279) Dictyostelium discoideum slug cDNA, clone SSH511.      987   0.0    1
(AU038259) Dictyostelium discoideum slug cDNA, clone SSH484.      987   0.0    1
dna update 2009. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   277   1e-73
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   150   3e-35
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   150   3e-35
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   135   6e-31
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...   133   4e-30
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   133   4e-30
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...   133   4e-30
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...   133   4e-30
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...   133   4e-30
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...   132   7e-30
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSB127 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB127Z
3' end seq. 
>SSB127Z.Seq
----------AAGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTG
CTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATA
CATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAG
TTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAA
CCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATA
GTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGG
GTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAG
TTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGAT
CTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCT
AATTGTAACTAGTTCTAGATCGCGAGCGGCGCACCGCTTGAGCTCCAATT
Length of 3' end seq. 580
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -