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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB126
Library SS
(Link to library)
Clone ID SSB126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09131-1
Original site URL
Representative seq. ID SSB126Z
(Link to Original site)
Representative DNA sequence 
>SSB126 (SSB126Q) /CSM/SS/SSB1-B/SSB126Q.Seq.d/
XXXXXXXXXXGGGTTGGGTATTTGTTTAGGTTTAGCTTCTTACTATTCCGTTGTATTATT
AAAACATAAACTTCACATCGATGATGCTTTAGACGTTAGCTCTGTACATGGTTTAACTGG
TATTATTGGTTCATTGGCAATTGGTTTCTGTGCTGAACTCTCTGTTAATCCAAATGGTGC
AAATGGTGCTTTCTATGGTAATCCAAAATTAATTGGTACTCAATTACTCGGTGTCGTTTC
TGTCGCTGTTTGGCGTGCCGCTTGGACTTGGGTCCTCTTAAAGATTATCGATGCCACTAT
CGGTGTTAAAATCGATGAATCTGAAGAAGAATTAGGTCTCGATCTCGTCGAACATGGTGA
ATTCGCTTATCATAATATCTCACTTCAAGGTAATGAAAATCATTATTCATCTGTTATTAA
TAGTCATGATTTTTTTAAATAAATAAATAAATAAATAAATAAATAAATTAAATTATAATA
AAAAA
sequence update 1997. 7. 5
Translated Amino Acid sequence 
---LGICLGLASYYSVVLLKHKLHIDDALDVSSVHGLTGIIGSLAIGFCAELSVNPNGAN
GAFYGNPKLIGTQLLGVVSVAVWRAAWTWVLLKIIDATIGVKIDESEEELGLDLVEHGEF
AYHNISLQGNENHYSSVINSHDFFK*ink*ink*ikl**k
Translated Amino Acid sequence (All Frames) 
Frame A:
---gwvfv*v*lltiplyy*ninftsmml*tlalymv*lvllvhwqlvsvlnslliqmvq
mvlsmviqn*lvlnysvsflslfgvplglgss*rlsmplsvlksmnlkkn*vsissnmvn
sliiishfkvmkiiihlllivmiflnk*ink*inklnynkk


Frame B:
---vgylfrfsfllfrciikt*tshr*cfrr*lctwfnwyywfignwflc*tlc*skwck
wcflw*skinwysitrcrfcrclacrldlgplkdyrchyrc*nr*i*rrirsrsrrtw*i
rls*yltsr**kslficy**s*ff*ink*ink*in*iiik


Frame C:
---LGICLGLASYYSVVLLKHKLHIDDALDVSSVHGLTGIIGSLAIGFCAELSVNPNGAN
GAFYGNPKLIGTQLLGVVSVAVWRAAWTWVLLKIIDATIGVKIDESEEELGLDLVEHGEF
AYHNISLQGNENHYSSVINSHDFFK*ink*ink*ikl**k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB126 (SSB126Q) /CSM/SS/SSB1-B/SSB126Q.Seq.d/                        831   0.0
SSM779 (SSM779Q) /CSM/SS/SSM7-D/SSM779Q.Seq.d/                        815   0.0
SSH245 (SSH245Q) /CSM/SS/SSH2-B/SSH245Q.Seq.d/                        815   0.0
SSG223 (SSG223Q) /CSM/SS/SSG2-A/SSG223Q.Seq.d/                        815   0.0
SLH689 (SLH689Q) /CSM/SL/SLH6-D/SLH689Q.Seq.d/                        815   0.0
VFL448 (VFL448Q) /CSM/VF/VFL4-B/VFL448Q.Seq.d/                        801   0.0
SLB420 (SLB420Q) /CSM/SL/SLB4-A/SLB420Q.Seq.d/                        799   0.0
SSE279 (SSE279Q) /CSM/SS/SSE2-D/SSE279Q.Seq.d/                        783   0.0
AFL895 (AFL895Q) /CSM/AF/AFL8-D/AFL895Q.Seq.d/                        775   0.0
SSB619 (SSB619Q) /CSM/SS/SSB6-A/SSB619Q.Seq.d/                        708   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25665) Dictyostelium discoideum slug cDNA, clone SSB126.        837   0.0    1
(FB719428) Sequence 903 from Patent WO2007137973.                 821   0.0    1
(AF510716) Dictyostelium discoideum ammonium transport prote...   821   0.0    1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   821   0.0    1
(AB049067) Dictyostelium discoideum gene for ammonium transp...   821   0.0    1
(AU038079) Dictyostelium discoideum slug cDNA, clone SSH245.      821   0.0    1
(C89840) Dictyostelium discoideum slug cDNA, clone SSG223.        821   0.0    1
(AU039389) Dictyostelium discoideum slug cDNA, clone SLH689.      813   0.0    1
(AU033771) Dictyostelium discoideum slug cDNA, clone SLB420.      805   0.0    1
(BJ433959) Dictyostelium discoideum cDNA clone:ddv23p12, 3' ...   795   0.0    1
dna update 2009. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000866_584(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...   124   1e-27
AP009049_2979(AP009049|pid:none) Clostridium kluyveri NBRC 12016...   110   2e-23
AP009049_375(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ...   107   1e-22
CP000673_397(CP000673|pid:none) Clostridium kluyveri DSM 555, co...   107   1e-22
AE1930(AE1930) ammonium transporter alr0992 [imported] - Nostoc ...   104   9e-22
AP009389_664(AP009389|pid:none) Pelotomaculum thermopropionicum ...   103   2e-21
CP000875_1943(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   102   6e-21
AM746676_7403(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   100   2e-20
CP000117_2941(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   100   2e-20
GN119032_1(GN119032|pid:none) Sequence 1928 from Patent WO200903...    94   2e-18
protein update 2009. 6. 8
PSORT 

 psg: 0.93  gvh: 0.54  alm: 0.35  top: 0.47  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for SSB126 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB126Z
3' end seq. 
>SSB126Z.Seq
----------GGGTTGGGTATTTGTTTAGGTTTAGCTTCTTACTATTCCGTTGTATTATT
AAAACATAAACTTCACATCGATGATGCTTTAGACGTTAGCTCTGTACATGGTTTAACTGG
TATTATTGGTTCATTGGCAATTGGTTTCTGTGCTGAACTCTCTGTTAATCCAAATGGTGC
AAATGGTGCTTTCTATGGTAATCCAAAATTAATTGGTACTCAATTACTCGGTGTCGTTTC
TGTCGCTGTTTGGCGTGCCGCTTGGACTTGGGTCCTCTTAAAGATTATCGATGCCACTAT
CGGTGTTAAAATCGATGAATCTGAAGAAGAATTAGGTCTCGATCTCGTCGAACATGGTGA
ATTCGCTTATCATAATATCTCACTTCAAGGTAATGAAAATCATTATTCATCTGTTATTAA
TAGTCATGATTTTTTTAAATAAATAAATAAATAAATAAATAAATAAATTAAATTATAATA
AAAAA
Length of 3' end seq. 475
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -