>SSB115 (SSB115Q) /CSM/SS/SSB1-A/SSB115Q.Seq.d/
XXXXXXXXXXCCACCAGTCGATGGTGTTTTTGCAATGGCACCAAAAGTTTTATCAGGTGA
ACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTG
TTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTAT
CTCTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGA
CGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAA
GATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATA
TGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATT
TGATGTATCATCTNNTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAA
TAATCAAAAAAGAAAAAAAATAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAAA
A

---PVDGVFAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKGIS
EIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYA
MILDSGVVKHLAVEEGGKFDVSSXEAILKQL*t*nqsinnqkrkkikk*ki*nfrkk*k

Frame A:
---hqsmvflqwhqkfyqvnfsktvklfyslfqvlllqlvqpniyqvllknqkklkkkvs
lksfvlppmthll*vlgvktlmqvlqllyfqmvtlnslkrldlkwmvrlsylvktdlkdm
l*sltlvlsnilqlkkvvnlmyhlxkqs*nnykhkinl*iikkekk*knkkykileksk


Frame B:
---tsrwcfcngtksfir*tfqrp*scfircsrcfysnlfsqtftrfy*kirrn*kkryl
*nllychq*picyeclg*rr*crycsyftfrw*l*ih*kdwt*ngw*gfltw*rqiskic
ydp*lwccqtscs*rrw*i*ciix*snlktiiniksiyk*skkkknkkiknikf*kkvk


Frame C:
---PVDGVFAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKGIS
EIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYA
MILDSGVVKHLAVEEGGKFDVSSXEAILKQL*t*nqsinnqkrkkikk*ki*nfrkk*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB115 (SSB115Q) /CSM/SS/SSB1-A/SSB115Q.Seq.d/                        876   0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        868   0.0
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/                        868   0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        868   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        868   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        868   0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        860   0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/                        852   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                        829   0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/                        825   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48  2e-06  2
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20.    46  0.44  1
AX345182|AX345182.1 Sequence 253 from Patent WO0200928.           46  0.44  1
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome.    46  0.44  1
AC132016|AC132016.3 Rattus norvegicus clone CH230-218A13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.44  1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46  0.44  1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46  0.44  1
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces.    42  1.1  2
AC141113|AC141113.5 Medicago truncatula clone mth2-7h7, complete sequence.    42  1.4  3
AL353730|AL353730.13 Human DNA sequence from clone RP11-55P9 on chromosome 9.    44  1.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...   132   6e-30
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   132   7e-30
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...   132   7e-30
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   130   2e-29
CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   129   5e-29
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat...   127   1e-28
CP000248_1994(CP000248|pid:none) Novosphingobium aromaticivorans...   127   2e-28
BA000032_1293(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22...   124   2e-27
CP000158_1040(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   124   2e-27
CP000790_1683(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   123   3e-27

 psg: 0.72  gvh: 0.57  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for SSB115 is cyt

>SSB115Z.Seq
----------CCACCAGTCGATGGTGTTTTTGCAATGGCACCAAAAGTTTTATCAGGTGA
ACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTG
TTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAAAGGTAT
CTCTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGA
CGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAA
GATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATA
TGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATT
TGATGTATCATCTNNTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAA
TAATCAAAAAAGAAAAAAAATAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAAA
A