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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB107
Library SS
(Link to library)
Clone ID SSB107
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04495-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSB107 (SSB107Q) /CSM/SS/SSB1-A/SSB107Q.Seq.d/
ATTTAAAATCATGCAAAATTCAGCAGAAAAAGAAGAATTCAAAGGTTATTTAGAAAAGAG
TGGTGTCATAGATGCATTAACTAAAGTACTTGTTGGCTTATACGAAGAATNTGATAAACC
TTCAGATGCATTAGAATTTATTAAAAAACATNTTGGAAATTCTTTAGGTATCGATGTTGA
TGCATTAAAACAAGAAAATGCTGATCTCAAAGCTGAAGTTTCCGCATTAACTCAAAGAGT
TGATGATTTATCTAAAAAATTAGAAGCAGCAAACAAACAATAAAGGAGAAAAGAGAGAGA
AAAAAAAAAAAAAAAAGGAAAAAAAAAAAGAAAAGAAATAAAAAATAAATTCATGTAATA
TTATATGTATAAAAAAAAGGAAATTTATTAATAAATTTTGGTTAAAAAAGAAAATAATAA
TAAAAATAGTTTAAGATAGC
sequence update 1997. 8. 7
Translated Amino Acid sequence 
FKIMQNSAEKEEFKGYLEKSGVIDALTKVLVGLYEEXDKPSDALEFIKKHXGNSLGIDVD
ALKQENADLKAEVSALTQRVDDLSKKLEAANKQ*rrkerekkkkkgkkkrkeiknkfm*y
ymykkkeiy**ilvkkennnknslr*
Translated Amino Acid sequence (All Frames) 
Frame A:
i*nhakfsrkrriqrlfrkewchrcin*stcwlirrx**tfrciriy*ktxwkffryrc*
ciktrkc*sqs*sfrinsks**fi*kirsskqtikekrerkkkkkrkkkkkrnkk*ihvi
lyv*kkgnllinfg*krk***k*fki


Frame B:
FKIMQNSAEKEEFKGYLEKSGVIDALTKVLVGLYEEXDKPSDALEFIKKHXGNSLGIDVD
ALKQENADLKAEVSALTQRVDDLSKKLEAANKQ*rrkerekkkkkgkkkrkeiknkfm*y
ymykkkeiy**ilvkkennnknslr*


Frame C:
lksckiqqkkknskvi*krvvs*mh*lkyllaytknxinlqmh*nllknxleil*vsmlm
h*nkkmlisklkfph*lkelmiylkn*kqqtnnkgekrekkkkkkekkkekk*kinscni
icikkrkfinkfwlkkkiiikiv*ds
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB107 (SSB107Q) /CSM/SS/SSB1-A/SSB107Q.Seq.d/                        581   e-165
VHC512 (VHC512Q) /CSM/VH/VHC5-A/VHC512Q.Seq.d/                         38   0.11
SHJ860 (SHJ860Q) /CSM/SH/SHJ8-C/SHJ860Q.Seq.d/                         38   0.11
SHB302 (SHB302Q) /CSM/SH/SHB3-A/SHB302Q.Seq.d/                         38   0.11
CHH316 (CHH316Q) /CSM/CH/CHH3-A/CHH316Q.Seq.d/                         38   0.11
AHK746 (AHK746Q) /CSM/AH/AHK7-B/AHK746Q.Seq.d/                         38   0.11
VSK346 (VSK346Q) /CSM/VS/VSK3-B/VSK346Q.Seq.d/                         34   1.7
VHB896 (VHB896Q) /CSM/VH/VHB8-D/VHB896Q.Seq.d/                         34   1.7
VFJ364 (VFJ364Q) /CSM/VF/VFJ3-C/VFJ364Q.Seq.d/                         34   1.7
VFE532 (VFE532Q) /CSM/VF/VFE5-B/VFE532Q.Seq.d/                         34   1.7
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051830) Dictyostelium discoideum slug cDNA, clone SSB107.      490   e-134  1
(AY034208) Wolffiella neotropica maturase K (matK) gene, com...    48   0.29   1
(AY034207) Wolffiella welwitschii maturase K (matK) gene, co...    48   0.29   1
(AY034205) Wolffiella gladiata maturase K (matK) gene, compl...    48   0.29   1
(AY034204) Wolffiella oblonga maturase K (matK) gene, comple...    48   0.29   1
(AY034203) Wolffiella lingulata maturase K (matK) gene, comp...    48   0.29   1
(AY034182) Pistia stratiotes maturase K (matK) gene, complet...    48   0.29   1
(AM920621) Pistia stratiotes plastid partial trnK gene intro...    48   0.29   1
(CP000673) Clostridium kluyveri DSM 555, complete genome.          48   0.29   1
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    48   0.29   1
dna update 2009. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54I57) RecName: Full=C-Myc-binding protein homolog;                 166   2e-40
AM502253_519(AM502253|pid:none) Leishmania infantum chromosome 35.     81   1e-14
CP000081_521(CP000081|pid:none) Leishmania major chromosome 35, ...    80   2e-14
AM494971_520(AM494971|pid:none) Leishmania braziliensis chromoso...    80   2e-14
CP001332_276(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    79   6e-14
EU164537_4(EU164537|pid:none) Coffea canephora BAC 41C02, genomi...    77   1e-13
CR761957_1(CR761957|pid:none) Xenopus tropicalis finished cDNA, ...    77   2e-13
BT082727_1(BT082727|pid:none) Anoplopoma fimbria clone afim-evh-...    76   4e-13
BT048422_1(BT048422|pid:none) Salmo salar clone ssal-evf-514-378...    75   5e-13
BT037495_1(BT037495|pid:none) Zea mays full-length cDNA clone ZM...    75   9e-13
protein update 2009. 7. 6
PSORT 

 psg: 0.47  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSB107 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSB107E
Full length Seq. 
>SSB107E.Seq
ATTTAAAATCATGCAAAATTCAGCAGAAAAAGAAGAATTCAAAGGTTATTTAGAAAAGAG
TGGTGTCATAGATGCATTAACTAAAGTACTTGTTGGCTTATACGAAGAATNTGATAAACC
TTCAGATGCATTAGAATTTATTAAAAAACATNTTGGAAATTCTTTAGGTATCGATGTTGA
TGCATTAAAACAAGAAAATGCTGATCTCAAAGCTGAAGTTTCCGCATTAACTCAAAGAGT
TGATGATTTATCTAAAAAATTAGAAGCAGCAAACAAACAATAAAGGAGAAAAGAGAGAGA
AAAAAAAAAAAAAAAAGGAAAAAAAAAAAGAAAAGAAATAAAAAATAAATTCATGTAATA
TTATATGTATAAAAAAAAGGAAATTTATTAATAAATTTTGGTTAAAAAAGAAAATAATAA
TAAAAATAGTTTAAGATAGCN
Length of full length seq. 441