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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSB106
Library SS
(Link to library)
Clone ID SSB106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID SSB106Z
(Link to Original site)
Representative DNA sequence 
>SSB106 (SSB106Q) /CSM/SS/SSB1-A/SSB106Q.Seq.d/
XXXXXXXXXXCCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGGATGA
CTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTT
AACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAA
ATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAA
TATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTATACTCTNNNAAATA
AAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAANNTCAG
AAAA
sequence update 1997. 7.14
Translated Amino Acid sequence 
---LLHTKLIRLLAKMVDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKY
SPTTGQVTVIKKDETFPKNMTVTQDDNTSFIFNLYSXK*nnmffflfkktlnnkimxxrk
Translated Amino Acid sequence (All Frames) 
Frame A:
---hysips**gclqrwwmtlfncqfqnllhqilkllai*qfvkhihhmtml*mevftln
tpqqlaklqllkkmrhsqri*llhkmiihlssltytlxnkticfffslrkl*iikl*xse


Frame B:
---itpyqvdkvackdgg*lcsiansktystrf*nc*pfnsssntyti*lcckwkcll*i
lpnnwpsysy*kr*dipkeydcytr**yifhl*lilxxikqyvffsl*enfk**nyexqk


Frame C:
---LLHTKLIRLLAKMVDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKY
SPTTGQVTVIKKDETFPKNMTVTQDDNTSFIFNLYSXK*nnmffflfkktlnnkimxxrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB106 (SSB106Q) /CSM/SS/SSB1-A/SSB106Q.Seq.d/                        618   e-176
SSM310 (SSM310Q) /CSM/SS/SSM3-A/SSM310Q.Seq.d/                        595   e-169
SSJ652 (SSJ652Q) /CSM/SS/SSJ6-C/SSJ652Q.Seq.d/                        595   e-169
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                        593   e-169
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/                        593   e-169
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/                        593   e-169
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/                        593   e-169
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                        593   e-169
SSJ287 (SSJ287Q) /CSM/SS/SSJ2-D/SSJ287Q.Seq.d/                        587   e-167
VSJ503 (VSJ503Q) /CSM/VS/VSJ5-A/VSJ503Q.Seq.d/                        581   e-165
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051988) Dictyostelium discoideum slug cDNA, clone SSB106.      577   e-177  2
(C91121) Dictyostelium discoideum slug cDNA, clone SSJ652.        480   e-169  3
(C92519) Dictyostelium discoideum slug cDNA, clone SSE517.        480   e-169  3
(AU037690) Dictyostelium discoideum slug cDNA, clone SSE177.      480   e-169  3
(AU039039) Dictyostelium discoideum slug cDNA, clone SSM310.      480   e-169  3
(AU051804) Dictyostelium discoideum slug cDNA, clone SSA256.      480   e-169  3
(AU037807) Dictyostelium discoideum slug cDNA, clone SSE320.      480   e-169  3
(C90843) Dictyostelium discoideum slug cDNA, clone SSJ220.        480   e-168  3
(C91339) Dictyostelium discoideum slug cDNA, clone SSK494.        480   e-168  3
(C94348) Dictyostelium discoideum slug cDNA, clone SSK866.        480   e-168  3
dna update 2009. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   163   3e-43
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   130   2e-33
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    66   4e-10
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    35   1.0
AE014187_514(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.8
CP000383_1880(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    32   6.8
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    32   8.9
protein update 2009. 6. 8
PSORT 

 psg: 0.61  gvh: 0.37  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSB106 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSB106Z
3' end seq. 
>SSB106Z.Seq
----------CCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGGATGA
CTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTT
AACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAA
ATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAA
TATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTATACTCTNNNAAATA
AAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAANNTCAG
AAAA
Length of 3' end seq. 354
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -