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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA863
Library SS
(Link to library)
Clone ID SSA863
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14496-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSA863 (SSA863Q) /CSM/SS/SSA8-C/SSA863Q.Seq.d/
XXXXXXXXXXAGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTTACGG
TCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCACTCA
TCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGAGACA
TTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCTGGAC
TTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTCCAGT
TGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAACTCA
ACCAATCATCGTCAAAGCCCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAGCTGT
CGGTGGTGCTTGTATCTTAGTTGCT
sequence update 1997. 7.26
Translated Amino Acid sequence 
---FSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRHF
HLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILPTQP
IIVKARYFSKVAEKKIKAVGGACILVA
Translated Amino Acid sequence (All Frames) 
Frame A:
---dsvsienqevtfvpvtvvlvntesiqvvvvmlvvsliteltltntiqvisvn*v*di
siy*etntivqpsh*krsgl*sqnpsenh*lprmtvllqllmspkkvsskf*vtvssqln
qssskpvislkslkrksklsvvlvs*l


Frame B:
---iq*a*kikr*rlcrlrscw*tqkasrwsw*cwwshssqn*l*qipsrlfr*iryetf
pfikkpiplsnrlirkdldfsprirqkiiscqe*rycssc*chpkrflqsfrsryppnst
nhrqsplfl*sr*kenqscrwclylsc


Frame C:
---FSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRHF
HLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILPTQP
IIVKARYFSKVAEKKIKAVGGACILVA
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA863 (SSA863Q) /CSM/SS/SSA8-C/SSA863Q.Seq.d/                        862   0.0
VSJ737 (VSJ737Q) /CSM/VS/VSJ7-B/VSJ737Q.Seq.d/                        854   0.0
VSJ618 (VSJ618Q) /CSM/VS/VSJ6-A/VSJ618Q.Seq.d/                        854   0.0
VSJ605 (VSJ605Q) /CSM/VS/VSJ6-A/VSJ605Q.Seq.d/                        854   0.0
VSJ421 (VSJ421Q) /CSM/VS/VSJ4-A/VSJ421Q.Seq.d/                        854   0.0
VSI571 (VSI571Q) /CSM/VS/VSI5-C/VSI571Q.Seq.d/                        854   0.0
VSI537 (VSI537Q) /CSM/VS/VSI5-B/VSI537Q.Seq.d/                        854   0.0
VSH826 (VSH826Q) /CSM/VS/VSH8-B/VSH826Q.Seq.d/                        854   0.0
VSH782 (VSH782Q) /CSM/VS/VSH7-D/VSH782Q.Seq.d/                        854   0.0
VSG825 (VSG825Q) /CSM/VS/VSG8-B/VSG825Q.Seq.d/                        854   0.0
own update 2001. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D50338|D50338.1 Dictyostelium discoideum DNA for ribosomal protein, complete cds.   854  0.0  1
BI863538|BI863538.1 kx45d11.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    82  6e-27  3
BG661858|BG661858.1 kx07c07.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    82  1e-23  3
BI744149|BI744149.1 kx56c02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    82  4e-23  3
BP012469|BP012469.1 Ciona intestinalis cDNA, clone:ciad51p13, 5' end, single read.    74  1e-20  3
BG226274|BG226274.1 kq19f01.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    64  2e-20  4
BG227807|BG227807.1 kq14h10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    64  2e-20  4
BE028930|BE028930.1 kp22d12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    64  2e-20  4
BF015311|BF015311.1 kq62e03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    64  2e-20  4
BG227917|BG227917.1 kq17b08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL2A_OSCBR O01358 60S RIBOSOMAL PROTEIN L27A ;, mRNA sequence.    64  2e-20  4
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P48160) RecName: Full=60S ribosomal protein L27a;  &D50338_1(D5...   306   1e-82
AY961477_1(AY961477|pid:none) Phytophthora infestans clone MY-19...   221   8e-57
BT046766_1(BT046766|pid:none) Salmo salar clone ssal-eve-548-138...   220   1e-56
AJ312339_1(AJ312339|pid:none) Oncorhynchus mykiss partial mRNA f...   218   4e-56
(P18445) RecName: Full=60S ribosomal protein L27a;  &R5RTLA(S130...   217   9e-56
(P46776) RecName: Full=60S ribosomal protein L27a;  &(Q5REY2) Re...   216   2e-55
AF502247_1(AF502247|pid:none) Epinephelus coioides ribosomal pro...   216   2e-55
AJ307670_3(AJ307670|pid:none) Mus musculus St5 gene, L27a gene a...   216   2e-55
AJ843085_1(AJ843085|pid:none) Platichthys flesus mRNA for 60S ri...   216   2e-55
AB374966_1(AB374966|pid:none) Solea senegalensis RPL27a mRNA for...   215   3e-55
protein update 2009. 6. 8
PSORT 

 psg: 0.73  gvh: 0.15  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.11
 nuc: 0.05  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSA863 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA863Z
3' end seq. 
>SSA863Z.Seq
----------
AGATTCAGTAAGCATAGAAAATCAAGAGGTGACGTTTGTGCCGGTTACG
GTCGTGTTGGTAAACACAGAAAGCATCCAGGTGGTCGTGGTAATGCTGGTGGTCTCACTC
ATCACAGAATTAACTTTGACAAATACCATCCAGGTTATTTCGGTAAATTAGGTATGAGAC
ATTTCCATTTATTAAGAAACCAATACCATTGTCCAACCGTCTCATTAGAAAAGATCTGGA
CTTTAGTCCCAGAATCCGTCAGAAAATCATTAGCTGCCAAGAATGACGGTACTGCTCCAG
TTGTTGATGTCACCCAAAAAGGTTTCTTCAAAGTTTTAGGTCACGGTATCCTCCCAACTC
AACCAATCATCGTCAAAGCCCGTTATTTCTCTAAAGTCGCTGAAAAGAAAATCAAAGCTG
TCGGTGGTGCTTGTATCTTAGTTGCT
Length of 3' end seq. 436
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -