>SSA854 (SSA854Q) /CSM/SS/SSA8-C/SSA854Q.Seq.d/
CAACTTTCTTCAGTTTCAGTAGGAAGCACACAGTCAAATAACAATGCAAGCACTCTTAGA
TGCAGCAGCACTTGTTGTAATTCCAGGTTTATTAACTGCTGCTGCTGTAGCTCATATATA
AATCTTCAAAGATTTATGATTTCACTAATAATTCATATTTTAATCCTAAGGGAACATATA
AACATTAATTTTGTATATTTAATAAATATTTAATTATATTCATTTTGAAATTTTAATTTC
TTATAAAAAXXXXXXXXXX

QLSSVSVGSTQSNNNASTLRCSSTCCNSRFINCCCCSSYINLQRFMISLIIHILILREHI
NINFVYLINI*lysf*nfnfl*---

Frame A:
QLSSVSVGSTQSNNNASTLRCSSTCCNSRFINCCCCSSYINLQRFMISLIIHILILREHI
NINFVYLINI*lysf*nfnfl*---


Frame B:
nflqfq*eahsqitmqalldaaalvvipglltaaavahi*ifkdl*fh**fif*s*gni*
tlilyi**ifnyihfeilisyk---


Frame C:
tffsfsrkhtvk*qckhs*mqqhll*fqvy*llll*liyksskiydftnnsyfnpkgtyk
h*fcifnkyliifilkf*flik---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA854 (SSA854Q) /CSM/SS/SSA8-C/SSA854Q.Seq.d/                        494   e-139
SSM440 (SSM440Q) /CSM/SS/SSM4-B/SSM440Q.Seq.d/                        202   2e-51
SSJ512 (SSJ512Q) /CSM/SS/SSJ5-A/SSJ512Q.Seq.d/                        202   2e-51
SSJ246 (SSJ246Q) /CSM/SS/SSJ2-B/SSJ246Q.Seq.d/                        202   2e-51
SSG250 (SSG250Q) /CSM/SS/SSG2-C/SSG250Q.Seq.d/                        202   2e-51
SSJ494 (SSJ494Q) /CSM/SS/SSJ4-D/SSJ494Q.Seq.d/                        194   4e-49
SSC275 (SSC275Q) /CSM/SS/SSC2-D/SSC275Q.Seq.d/                        180   7e-45
SSF823 (SSF823Q) /CSM/SS/SSF8-A/SSF823Q.Seq.d/                        178   3e-44
SSF325 (SSF325Q) /CSM/SS/SSF3-B/SSF325Q.Seq.d/                        178   3e-44
SHK706 (SHK706Q) /CSM/SH/SHK7-A/SHK706Q.Seq.d/                        178   3e-44

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX294374|BX294374.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-260F12.    54  1e-05  4
BX322543|BX322543.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    54  1e-05  4
AE003829|AE003829.3 Drosophila melanogaster 2R  section 21 of 74 of the complete arm, complete sequence.    44  8e-04  7
CC236559|CC236559.1 CH261-7P11_RM1.2 CH261 Gallus gallus genomic clone CH261-7P11, DNA sequence.    54  8e-04  1
AC007398|AC007398.6 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone BACR20O22, complete sequence.    44  0.006  3
AL356277|AL356277.18 Human DNA sequence from clone RP11-554D15 on chromosome 6.    34  0.009  7
AL672097|AL672097.5 Zebrafish DNA sequence from clone BUSM1-37O5 in linkage group 9.    54  0.010  2
AL935307|AL935307.9 Zebrafish DNA sequence from clone DKEY-63P22.    54  0.011  7
BX321886|BX321886.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36  0.011  6
AC027067|AC027067.2 Homo sapiens chromosome 1 clone RP11-185F19 map 1, WORKING DRAFT SEQUENCE, 15 unordered pieces.    40  0.029  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB...    45   7e-08
(Q54R31) RecName: Full=Uncharacterized transmembrane protein DDB...    40   1e-05

 psg: 0.87  gvh: 0.54  alm: 0.31  top: 0.53  tms: 0.07  mit: 0.57  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.12  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSA854 is mit

>SSA854F.Seq
CAACTTTCTTCAGTTTCAGTAGGAAGCACACAGTCAAATAACAATGCAAGCACTCTTAGA
TGCAGCAGCACTTGTTGTAATTCCAGGTTTATTAACTGCTGCTGCTGTAGCTCATATATA
AATCTTCAAAGATTTATGATTTCACTAATAATTCATATTTTAATCCTAAGGGAACATATA
AACATTAATTTTGTATATTTAATAAATATTTAATTATATTCATTTTGAAATTTTAATTTC
TTATAAAAA----------