SSA832
Library SS
(Link to library)
Clone ID SSA832
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04479-1
Original site URL
Representative seq. ID SSA832Z
(Link to Original site)
Representative DNA sequence
>SSA832 (SSA832Q) /CSM/SS/SSA8-B/SSA832Q.Seq.d/
XXXXXXXXXXGGGACAACAACAACAACAACAANGGATGGACATGTGAATCATTTATTGGT
GATATAAAATTATCAGATTTAAAACAAGTTTTGGTAAATGCTGGTAAACAAGTTCAATTT
GATCAAGGTATTTTAAATTGTGGTGGTTTANTTNACATTTGGAGAGATGAAGATCATGGA
GGTAATTCAATTATAAATGTTGATGGTATAATTTTTGATGAATATTATTTAATTAAAGAA
TTATTATATAAACAATTCCAAATTGTTTAATTTTTTTTTTTTTTTTTAATCAAAAATAAA
TTGTAAATANTTTTTTTTTTTTATTTTTATTTTTATTTTTTTTGTTNGGGTAATTAAAAA
AAAAAAGNAAATATTAAATAAAAAATTAATAAAACTAAAAATAAAAACTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 9.30
Translated Amino Acid sequence
---DNNNNNXGWTCESFIGDIKLSDLKQVLVNAGKQVQFDQGILNCGGLXXIWRDEDHGG
NSIINVDGIIFDEYYLIKELLYKQFQIV*fffffliknkl*ixfffyfyfyffcxgn*kk
kxnik*kinktknkn*kkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---gqqqqqqxmdm*iiyw*ykiirfktsfgkcw*tssi*sryfklwwfxxhler*rswr
*fnykc*wynf**ilfn*riii*tipnclifffffnqk*ivnxffflflflfflxg*lkk
kxky*ikn**n*k*klkkkkkkkkkkkkkkkkkkk


Frame B:
---DNNNNNXGWTCESFIGDIKLSDLKQVLVNAGKQVQFDQGILNCGGLXXIWRDEDHGG
NSIINVDGIIFDEYYLIKELLYKQFQIV*fffffliknkl*ixfffyfyfyffcxgn*kk
kxnik*kinktknkn*kkkkkkkkkkkkkkkkkk


Frame C:
---ttttttxdghvnhllvi*nyqi*nkfw*mlvnkfnlikvf*ivvvxxtfgemkimev
iql*mlmv*flmnii*lknyyinnsklfnfffff*skinckxffffifififfvxvikkk
kxilnkkliklkiktkkkkkkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA832 (SSA832Q) /CSM/SS/SSA8-B/SSA832Q.Seq.d/ 458 e-128
SFK353 (SFK353Q) /CSM/SF/SFK3-C/SFK353Q.Seq.d/ 40 0.029
VSE461 (VSE461Q) /CSM/VS/VSE4-C/VSE461Q.Seq.d/ 36 0.46
VHH277 (VHH277Q) /CSM/VH/VHH2-D/VHH277Q.Seq.d/ 36 0.46
VFM284 (VFM284Q) /CSM/VF/VFM2-D/VFM284Q.Seq.d/ 36 0.46
SSJ296 (SSJ296Q) /CSM/SS/SSJ2-D/SSJ296Q.Seq.d/ 36 0.46
SFB613 (SFB613Q) /CSM/SF/SFB6-A/SFB613Q.Seq.d/ 36 0.46
CHL425 (CHL425Q) /CSM/CH/CHL4-B/CHL425Q.Seq.d/ 36 0.46
CHJ160 (CHJ160Q) /CSM/CH/CHJ1-C/CHJ160Q.Seq.d/ 36 0.46
VSK138 (VSK138Q) /CSM/VS/VSK1-B/VSK138Q.Seq.d/ 34 1.8

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH136205|BH136205.1 ENTNI27TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.022 2
AZ529425|AZ529425.1 ENTBH88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.022 2
BM902105|BM902105.1 rc32c03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to WP:CE24610 Y71F9AL.10 ;, mRNA sequence. 46 0.046 2
AC117600|AC117600.4 Mus musculus clone RP23-449C20, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces. 48 0.095 1
AL049525|AL049525.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (ESSA project). 34 0.25 6
AZ684694|AZ684694.1 ENTJU02TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 0.32 2
AF080118|AF080118.1 Arabidopsis thaliana BAC F8M12. 34 0.34 6
AX347130|AX347130.1 Sequence 2201 from Patent WO0200928. 38 0.35 3
Z70284|Z70284.1 Caenorhabditis elegans cosmid K07F5. 36 0.48 3
BH929121|BH929121.1 odi19f05.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 38 0.93 2
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q652P4) RecName: Full=Cleavage and polyadenylation specificity ... 60 2e-08
BT059180_1(BT059180|pid:none) Salmo salar clone ssal-rgf-530-370... 57 3e-07
CU467944_1(CU467944|pid:none) Zebrafish DNA sequence from clone ... 54 1e-06
AJ851661_1(AJ851661|pid:none) Gallus gallus mRNA for hypothetica... 54 1e-06
AF374376_29(AF374376|pid:none) Oikopleura dioica clone BAC clone... 50 2e-05
AB168556_1(AB168556|pid:none) Macaca fascicularis testis cDNA cl... 50 2e-05
AB037788_1(AB037788|pid:none) Homo sapiens mRNA for KIAA1367 pro... 50 2e-05
(O35218) RecName: Full=Cleavage and polyadenylation specificity ... 50 2e-05
(Q9P2I0) RecName: Full=Cleavage and polyadenylation specificity ... 50 2e-05
AB168421_1(AB168421|pid:none) Macaca fascicularis testis cDNA cl... 50 2e-05
protein update 2009. 6. 8
PSORT

psg: 0.75 gvh: 0.36 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SSA832 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA832Z
3' end seq.
>SSA832Z.Seq
----------GGGACAACAACAACAACAACAANGGATGGACATGTGAATCATTTATTGGT
GATATAAAATTATCAGATTTAAAACAAGTTTTGGTAAATGCTGGTAAACAAGTTCAATTT
GATCAAGGTATTTTAAATTGTGGTGGTTTANTTNACATTTGGAGAGATGAAGATCATGGA
GGTAATTCAATTATAAATGTTGATGGTATAATTTTTGATGAATATTATTTAATTAAAGAA
TTATTATATAAACAATTCCAAATTGTTTAATTTTTTTTTTTTTTTTTAATCAAAAATAAA
TTGTAAATANTTTTTTTTTTTTATTTTTATTTTTATTTTTTTTGTTNGGGTAATTAAAAA
AAAAAAGNAAATATTAAATAAAAAATTAATAAAACTAAAAATAAAAACTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 457
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -