SSA826
Library SS
(Link to library)
Clone ID SSA826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00472-1
Original site URL
Representative seq. ID SSA826Z
(Link to Original site)
Representative DNA sequence
>SSA826 (SSA826Q) /CSM/SS/SSA8-B/SSA826Q.Seq.d/
XXXXXXXXXXGTTAAGGCTGCATTGGCTTTGCATGTATGCTTGAATCATCTCTTACTCCA
CCTACCATCAATCCACATCGCAACCAGTGAAATGATCATCATGGTACTGTCCACATTACC
AACTGATCTCATTCACCCAAAATTACTTCAACCACTCATTGAACTTTTGGTGACTTGTAT
CGATTTAAATCCAAATCATCGGCCAAATGCTTCCCAATTGGGTCAAAAATTAACTAAAAT
GTTAAAAAACACTGGTATGATGACTGAATAATTCAATTAAAAATATTTTTATTTTTTTTT
TCCAAATCTATTTTCATCATTAAATATTTTTAAAAGTAATTTTATTTTAACTTTTTTTTA
AAAAAAAAAACAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 6.25
Translated Amino Acid sequence
---KAALALHVCLNHLLLHLPSIHIATSEMIIMVLSTLPTDLIHPKLLQPLIELLVTCID
LNPNHRPNASQLGQKLTKMLKNTGMMTE*fn*kyfyfffpnlfsslnifksnfiltff*k
kkqkkqkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---lrlhwlcmya*iisystyhqstsqpvk*sswycphyqlisftqnyfnhslnfw*lvs
i*iqiigqmlpnwvkn*lkc*ktlv**lnnsiknififffqiyfhh*iflkvilf*lffk
kknkknkkkkkkkk


Frame B:
---*gcigfacmlessltpptinphrnq*ndhhgtvhitn*shspkitstth*tfgdlyr
fkskssakcfpigskin*nvkkhwydd*iiqlkiflfffsksifiikyf*k*fyfnfflk
kktkktkkkkkkkk


Frame C:
---KAALALHVCLNHLLLHLPSIHIATSEMIIMVLSTLPTDLIHPKLLQPLIELLVTCID
LNPNHRPNASQLGQKLTKMLKNTGMMTE*fn*kyfyfffpnlfsslnifksnfiltff*k
kkqkkqkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA826 (SSA826Q) /CSM/SS/SSA8-B/SSA826Q.Seq.d/ 545 e-154
SSD825 (SSD825Q) /CSM/SS/SSD8-B/SSD825Q.Seq.d/ 305 3e-82
AFJ304 (AFJ304Q) /CSM/AF/AFJ3-A/AFJ304Q.Seq.d/ 98 1e-19
SLG319 (SLG319Q) /CSM/SL/SLG3-A/SLG319Q.Seq.d/ 38 0.099
SFH629 (SFH629Q) /CSM/SF/SFH6-B/SFH629Q.Seq.d/ 38 0.099
SFG350 (SFG350Q) /CSM/SF/SFG3-C/SFG350Q.Seq.d/ 38 0.099
SFD362 (SFD362Q) /CSM/SF/SFD3-C/SFD362Q.Seq.d/ 38 0.099
SFA434 (SFA434Q) /CSM/SF/SFA4-B/SFA434Q.Seq.d/ 38 0.099
CHM640 (CHM640Q) /CSM/CH/CHM6-B/CHM640Q.Seq.d/ 38 0.099
CHJ879 (CHJ879Q) /CSM/CH/CHJ8-D/CHJ879Q.Seq.d/ 38 0.099

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB005172|CB005172.1 VVC010A05_126374 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC010A05 5, mRNA sequence. 48 0.082 1
BZ061180|BZ061180.1 lkf38c11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 36 0.15 3
BH683518|BH683518.1 BOMBZ34TR BO_2_3_KB Brassica oleracea genomic clone BOMBZ34, DNA sequence. 36 0.16 3
BZ084481|BZ084481.1 llh39a04.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 36 0.18 3
AY117369|AY117369.1 Gonioctena olivacea haplotype GoliB3 mitochondrial control region, complete sequence. 42 0.21 2
AY117376|AY117376.1 Gonioctena olivacea haplotype GoliDK mitochondrial control region, complete sequence. 42 0.21 2
AY117373|AY117373.1 Gonioctena olivacea haplotype GoliB7 mitochondrial control region, complete sequence. 42 0.21 2
AY117374|AY117374.1 Gonioctena olivacea haplotype GoliB8 mitochondrial control region, complete sequence. 42 0.21 2
AY117370|AY117370.1 Gonioctena olivacea haplotype GoliB4 mitochondrial control region, complete sequence. 42 0.21 2
AY117367|AY117367.1 Gonioctena olivacea haplotype GoliB1 mitochondrial control region, complete sequence. 42 0.21 2
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382125_944(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 35 0.81
AM494964_203(AM494964|pid:none) Leishmania braziliensis chromoso... 35 1.1
EU956871_1(EU956871|pid:none) Zea mays clone 1576139 unknown mRNA. 34 1.4
AM502245_157(AM502245|pid:none) Leishmania infantum chromosome 27. 34 1.8
DQ386647_2(DQ386647|pid:none) Astatotilapia burtoni clone BAC 20... 32 9.0
AE009441_557(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 32 9.0
AL606446_9(AL606446|pid:none) Oryza sativa genomic DNA, chromoso... 32 9.0
CR855136_7(CR855136|pid:none) Oryza sativa genomic DNA, chromoso... 32 9.0

protein update 2009. 6. 8
PSORT

psg: 0.89 gvh: 0.65 alm: 0.41 top: 0.33 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: extracellular, including cell wall
16.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSA826 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA826Z
3' end seq.
>SSA826Z.Seq
----------GTTAAGGCTGCATTGGCTTTGCATGTATGCTTGAATCATCTCTTACTCCA
CCTACCATCAATCCACATCGCAACCAGTGAAATGATCATCATGGTACTGTCCACATTACC
AACTGATCTCATTCACCCAAAATTACTTCAACCACTCATTGAACTTTTGGTGACTTGTAT
CGATTTAAATCCAAATCATCGGCCAAATGCTTCCCAATTGGGTCAAAAATTAACTAAAAT
GTTAAAAAACACTGGTATGATGACTGAATAATTCAATTAAAAATATTTTTATTTTTTTTT
TCCAAATCTATTTTCATCATTAAATATTTTTAAAAGTAATTTTATTTTAACTTTTTTTTA
AAAAAAAAAACAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 395
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -