>SSA821 (SSA821Q) /CSM/SS/SSA8-A/SSA821Q.Seq.d/
CAGTTTCCTCTCCTATTTATTATTTTATATATACACACAATTTTTAAAATGAAATTCTTA
TTTAAATTAGCCATCATTGCTTTAGCCTCAGTTTCAGTTGTCAGAGCANACGAAGAATGT
TTTGTCTGCACTGAACTTGTCAACTTTGCTGAAGATTTCGTTGAAAAGAATTCAAGTATC
GTTTATGTTGAAGGTGAATTAGAAAAAGTTTGCAAATTTGCCCCATCTGAATATCAAGCT
ACTTGTGATTCACTCGTCACTGCTTATGGTGCTGAACTTGTTCAATTATTAATTAACAXX
XXXXXXXX

QFPLLFIILYIHTIFKMKFLFKLAIIALASVSVVRAXEECFVCTELVNFAEDFVEKNSSI
VYVEGELEKVCKFAPSEYQATCDSLVTAYGAELVQLLIN---

Frame A:
QFPLLFIILYIHTIFKMKFLFKLAIIALASVSVVRAXEECFVCTELVNFAEDFVEKNSSI
VYVEGELEKVCKFAPSEYQATCDSLVTAYGAELVQLLIN---


Frame B:
sflsyllfyiytqflk*nsyln*psll*pqfqlsextknvlsalnlstllkislkriqvs
fmlkvn*kkfanlphlnikllvihssllmvlnlfny*l---


Frame C:
vsspiyyfiythnf*neili*ishhcfslsfscqsxrrmfclh*tcqlc*rfr*kefkyr
lc*r*irkslqicpi*issyl*ftrhclwc*tcsiin*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA821 (SSA821Q) /CSM/SS/SSA8-A/SSA821Q.Seq.d/                        585   e-166
SSK432 (SSK432Q) /CSM/SS/SSK4-B/SSK432Q.Seq.d/                        539   e-153
VSC157 (VSC157Q) /CSM/VS/VSC1-C/VSC157Q.Seq.d/                        230   1e-59
VSK203 (VSK203Q) /CSM/VS/VSK2-A/VSK203Q.Seq.d/                         44   0.001
VSF556 (VSF556Q) /CSM/VS/VSF5-C/VSF556Q.Seq.d/                         44   0.001
VSD234 (VSD234Q) /CSM/VS/VSD2-B/VSD234Q.Seq.d/                         44   0.001
VSD211 (VSD211Q) /CSM/VS/VSD2-A/VSD211Q.Seq.d/                         44   0.001
VSC847 (VSC847Q) /CSM/VS/VSC8-B/VSC847Q.Seq.d/                         44   0.001
VSA317 (VSA317Q) /CSM/VS/VSA3-A/VSA317Q.Seq.d/                         44   0.001
AHJ807 (AHJ807Q) /CSM/AH/AHJ8-A/AHJ807Q.Seq.d/                         44   0.001

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  0.018  4
AP001966|AP001966.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2002A22.    36  0.040  4
AC129391|AC129391.5 Rattus norvegicus clone CH230-8N15, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.061  1
AC133237|AC133237.2 Rattus norvegicus clone CH230-103A9, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    48  0.061  1
AZ415000|AZ415000.1 1M0189G07R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0189G07 R, DNA sequence.    48  0.061  1
BQ781144|BQ781144.1 UI-R-FF0-cpd-d-12-0-UI.s1 UI-R-FF0 Rattus norvegicus cDNA clone UI-R-FF0-cpd-d-12-0-UI 3', mRNA sequence.    48  0.061  1
AZ415156|AZ415156.1 1M0189C23R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0189C23 R, DNA sequence.    48  0.061  1
AC135255|AC135255.2 Homo sapiens 12 BAC RP11-118B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40  0.11  2
AC098592|AC098592.5 Homo sapiens BAC clone RP11-403N12 from 7, complete sequence.    36  0.14  6
AC004140|AC004140.2 Homo sapiens PAC clone RP5-841B21 from 7q11.2-q22, complete sequence.    48  0.15  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ...    52   5e-06
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    52   8e-06
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet...    51   1e-05
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167...    51   1e-05
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo...    51   1e-05
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    51   1e-05
AB170090_1(AB170090|pid:none) Macaca fascicularis brain cDNA clo...    50   2e-05
BC091483_1(BC091483|pid:none) Homo sapiens prosaposin, mRNA (cDN...    50   2e-05
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra...    50   2e-05
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl...    50   2e-05

 psg: 0.98  gvh: 0.77  alm: 0.41  top: 0.50  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSA821 is exc

>SSA821F.Seq
CAGTTTCCTCTCCTATTTATTATTTTATATATACACACAATTTTTAAAATGAAATTCTTA
TTTAAATTAGCCATCATTGCTTTAGCCTCAGTTTCAGTTGTCAGAGCANACGAAGAATGT
TTTGTCTGCACTGAACTTGTCAACTTTGCTGAAGATTTCGTTGAAAAGAATTCAAGTATC
GTTTATGTTGAAGGTGAATTAGAAAAAGTTTGCAAATTTGCCCCATCTGAATATCAAGCT
ACTTGTGATTCACTCGTCACTGCTTATGGTGCTGAACTTGTTCAATTATTAATTAACA--
--------