>SSA812 (SSA812Q) /CSM/SS/SSA8-A/SSA812Q.Seq.d/
XXXXXXXXXXAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGACCCATNTGTTAT
GAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAA
CTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTNTCTTACTTGGTGA
AGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGT
TGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAAC
ATAAAATCAATCTATAAATAATC

---GISEIFCIATNDPXVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAXLLGED
RSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinn

Frame A:
---kvslksfvlppmthxl*vlgvktlmqvlqllyfqmvtlnslkrldlkwmvrlsylvk
tdlkdml*sltlvlsnilqlkkvvnlmyhllkqs*nnykhkinl*ii


Frame B:
---ryl*nllychq*pxcyeclg*rr*crycsyftfrw*l*ih*kdwt*ngw*gxltw*r
qiskicydp*lwccqtscs*rrw*i*ciic*snlktiiniksiyk*


Frame C:
---GISEIFCIATNDPXVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAXLLGED
RSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE575 (VSE575Q) /CSM/VS/VSE5-D/VSE575Q.Seq.d/                        609   e-173
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        609   e-173
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/                        609   e-173
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        609   e-173
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        609   e-173
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        609   e-173
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        609   e-173
SSA812 (SSA812Q) /CSM/SS/SSA8-A/SSA812Q.Seq.d/                        609   e-173
SSB115 (SSB115Q) /CSM/SS/SSB1-A/SSB115Q.Seq.d/                        597   e-170
SSJ321 (SSJ321Q) /CSM/SS/SSJ3-A/SSJ321Q.Seq.d/                        593   e-169

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE001102|AE001102.1 Archaeoglobus fulgidus DSM 4304 section 5 of 172 of the complete genome.    46  0.25  1
AX345182|AX345182.1 Sequence 253 from Patent WO0200928.           46  0.25  1
AF125951|AF125951.1 Caenorhabditis elegans cosmid D2063.    36  1.5  3
AX345096|AX345096.1 Sequence 167 from Patent WO0200928.           34  3.2  2
AC073510|AC073510.7 Homo sapiens chromosome 8, clone RP11-240O2, complete sequence.    34  3.6  3
AC099567|AC099567.2 Homo sapiens chromosome 1 clone RP5-936J12, complete sequence.    42  4.0  1
AC113852|AC113852.5 Rattus norvegicus clone CH230-138N22, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  4.0  1
AC079989|AC079989.2 Rattus norvegicus chromosome 4 clone RP31-237I19 strain Brown Norway, WORKING DRAFT SEQUENCE, 7 ordered pieces.    42  4.0  1
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces.    42  4.0  1
AF177143|AF177143.1 Pseudhemilea longistigma 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    42  4.0  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   103   1e-21
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   103   2e-21
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat...   101   7e-21
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...    99   4e-20
CU207211_2650(CU207211|pid:none) Herminiimonas arsenicoxydans ch...    97   2e-19
EF017216_7(EF017216|pid:none) Tetrathiobacter kashmirensis molyb...    96   3e-19
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...    96   3e-19
CP000269_3009(CP000269|pid:none) Janthinobacterium sp. Marseille...    96   4e-19
CP000270_3903(CP000270|pid:none) Burkholderia xenovorans LB400 c...    96   4e-19
CP000230_3047(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    96   5e-19

 psg: 0.75  gvh: 0.50  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA812 is cyt

>SSA812Z.Seq
----------AAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGACCCATNTGTTAT
GAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAA
CTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTNTCTTACTTGGTGA
AGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGT
TGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAAC
ATAAAATCAATCTATAAATAATC