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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA811
Library SS
(Link to library)
Clone ID SSA811
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14426-1
Original site URL
Representative seq. ID SSA811Z
(Link to Original site)
Representative DNA sequence 
>SSA811 (SSA811Q) /CSM/SS/SSA8-A/SSA811Q.Seq.d/
XXXXXXXXXXGCAACTTGTCCCCAGGTGGTTTGTGTTATAGATTCCCACCACCATGTTGT
TCAATCTGTTGTCAGTCTTTCACTTTTTCCAATGGCTGGTCCTCTTATCACTTATGCATT
GATTCACAACAATTACACCCCAATATCTGGGCAAACTCTTTGGAATCATGCCCAAATCGC
CAATGGTACACATGCTTCAATGGTTGGAGCTTTTATCTATTTAGGCGTTGCTGGTTTATG
TGTTTTCCTTNTCTTATGCAGCACATTTACCGCTCCAAAGCATAATCCAGAAGATGATGA
ATAAACAAGATAAACAGNNNNNNNNNNNNNCNATAAATAAAATAAACAGTTTCCNNNNNN
CNCCNNCCAAATCCCAAATCCNCAANGNNNCTATTAATAANNCAAATNCNCAATCCCAAA
TCCCNNATAAAATANAAAGATGATTAATACTTCTTNAATTATCACAAATCAAATCAAATC
AAATAAAATAAAATAAAATTTTTTAGTGTA
sequence update 1997. 6.24
Translated Amino Acid sequence 
---TCPQVVCVIDSHHHVVQSVVSLSLFPMAGPLITYALIHNNYTPISGQTLWNHAQIAN
GTHASMVGAFIYLGVAGLCVFLXLCSTFTAPKHNPEDDE*tr*txxxxxxk*nkqfpxxx
xqipnpqxxy**xkxxipnpx*nxkmintsxiitnqiksnkik*nflv
Translated Amino Acid sequence (All Frames) 
Frame A:
---qlvprwfvl*ipttmlfnllsvfhffqwlvllslmh*fttitpqylgklfgimpksp
mvhmlqwlellsi*allvyvfsxsyaahlplqsiiqkmmnkqdkqxxxxxinkinsfxxx
pxksqixxxxinxxnxqsqipxkixr*lillxlsqiksnqik*nkif*c


Frame B:
---nlspgglcyrfpppccsiccqsftfsngwssyhlcidsqqlhpniwanslescpnrq
wytcfngwsfylfrrcwfmcfpxlmqhiyrska*srr**inkinxxxxxx*ik*tvsxxx
xpnpksxxxllixqxxnpksxikxkdd*yfxnyhksnqik*nkikffsv


Frame C:
---TCPQVVCVIDSHHHVVQSVVSLSLFPMAGPLITYALIHNNYTPISGQTLWNHAQIAN
GTHASMVGAFIYLGVAGLCVFLXLCSTFTAPKHNPEDDE*tr*txxxxxxk*nkqfpxxx
xqipnpqxxy**xkxxipnpx*nxkmintsxiitnqiksnkik*nflv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA811 (SSA811Q) /CSM/SS/SSA8-A/SSA811Q.Seq.d/                        603   e-171
VSC671 (VSC671Q) /CSM/VS/VSC6-C/VSC671Q.Seq.d/                        396   e-109
SSM678 (SSM678Q) /CSM/SS/SSM6-D/SSM678Q.Seq.d/                        396   e-109
SSI401 (SSI401Q) /CSM/SS/SSI4-A/SSI401Q.Seq.d/                        396   e-109
VSE451 (VSE451Q) /CSM/VS/VSE4-C/VSE451Q.Seq.d/                        391   e-108
SSB790 (SSB790Q) /CSM/SS/SSB7-D/SSB790Q.Seq.d/                        375   e-103
SSC642 (SSC642Q) /CSM/SS/SSC6-B/SSC642Q.Seq.d/                        357   1e-97
VSB847 (VSB847Q) /CSM/VS/VSB8-B/VSB847Q.Seq.d/                        339   2e-92
SSL273 (SSL273Q) /CSM/SS/SSL2-D/SSL273Q.Seq.d/                        327   9e-89
SSM772 (SSM772Q) /CSM/SS/SSM7-C/SSM772Q.Seq.d/                        278   8e-74
own update 2000.10.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AA917309|AA917309.1 SWOvL3CAN15H08 Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone onch956 5', mRNA sequence.    34  0.77  2
CA387515|CA387515.1 669503 NCCCWA 1RT Oncorhynchus mykiss cDNA clone 1RT163P15_B_H08 5', mRNA sequence.    38  4.4  2
AC138551|AC138551.2 Danio rerio clone CH211-31C22 strain Tue, WORKING DRAFT SEQUENCE, 9 ordered pieces.    42  6.3  1
AC130742|AC130742.4 Rattus norvegicus clone CH230-114L1, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  6.3  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000462_1659(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    32   6.4
AK125062_1(AK125062|pid:none) Homo sapiens cDNA FLJ43072 fis, cl...    32   6.5
BX908798_1812(BX908798|pid:none) Parachlamydia-related symbiont ...    32   8.3
DQ491002_784(DQ491002|pid:none) Paramecium bursaria Chlorella vi...    32   8.3
protein update 2008.11.18
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.24  top: 0.30  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSA811 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA811Z
3' end seq. 
>SSA811Z.Seq
----------GCAACTTGTCCCCAGGTGGTTTGTGTTATAGATTCCCACCACCATGTTGT
TCAATCTGTTGTCAGTCTTTCACTTTTTCCAATGGCTGGTCCTCTTATCACTTATGCATT
GATTCACAACAATTACACCCCAATATCTGGGCAAACTCTTTGGAATCATGCCCAAATCGC
CAATGGTACACATGCTTCAATGGTTGGAGCTTTTATCTATTTAGGCGTTGCTGGTTTATG
TGTTTTCCTTNTCTTATGCAGCACATTTACCGCTCCAAAGCATAATCCAGAAGATGATGA
ATAAACAAGATAAACAGNNNNNNNNNNNNNCNATAAATAAAATAAACAGTTTCCNNNNNN
CNCCNNCCAAATCCCAAATCCNCAANGNNNCTATTAATAANNCAAATNCNCAATCCCAAA
TCCCNNATAAAATANAAAGATGATTAATACTTCTTNAATTATCACAAATCAAATCAAATC
AAATAAAATAAAATAAAATTTTTTAGTGTA
Length of 3' end seq. 500
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -