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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA802
Library SS
(Link to library)
Clone ID SSA802
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02290-1
Original site URL
Representative seq. ID SSA802P
(Link to Original site)
Representative DNA sequence 
>SSA802 (SSA802Q) /CSM/SS/SSA8-A/SSA802Q.Seq.d/
GGTAAAAATTCAAATTTCTCAAAAGAAGAAGTTGCCAATATCTATGGAGAGTTCAATAAA
TTTGATAAAGACGGANATNGTAGTTTTGAAATAAAAGAATTTGTTTTATTCTTTAAAAGT
AAACTTCNAAACTATCCAGAAGATAATTTAAATAAATTATTTGACGCTTTTGATTCTGAT
AAAAGTAACACAATTGATTTCAAAGAATTAACTGTTGCATTATCCATTATTGGTAAAGGT
TCAGCTGAAGATAAATTAAAGGTTCTCTTTGATATTTATGACAAAGACAAGTCTGGAATT
TTAGAGAAAAAAXXXXXXXXXXCCCTCTGCTCTTACCTTTAACAGTAACCTCCCACACTA
TCCAGCACCTCTCTCACCCCCCTTATTTGACACTTCTGACTCTCACCAAAGTAACACAAT
TGATCTCACACCATTAACTGTTGCATTATCCATTATTGGTAAAGGTTCAGCTGCACATCA
NTNAAAGGTTCTCTNTCANATTTATCCCAAAGACAAGTCTGCCCTNTTAGACCCCAAAGA
AGTTGATGAAATGATTGCTTTAATGAAAAATGTTGGTGTGTCTTTGGGTAAATCCCCAGG
AGATATCCCCTTATTTATTGTTAAATTATTTGAAAACATTGATAAAGATAAANACAATTT
AATCTCTAGAGAAGAATTTTTAACTGAAGGTGCCAGATCACCATCACTCCTTACCTTATT
AGGCATTTTNNTTTATAAATTTTNNNNATTTATAAATTTTTTTTAAATAAATTTTTTTTT
TAAATTTTTTTTATAAAAAAAAA
sequence update 1999. 1.21
Translated Amino Acid sequence 
GKNSNFSKEEVANIYGEFNKFDKDGXXSFEIKEFVLFFKSKLXNYPEDNLNKLFDAFDSD
KSNTIDFKELTVALSIIGKGSAEDKLKVLFDIYDKDKSGILEKK---

---PSALTFNSNLPHYPAPLSPPLFDTSDSHQSNTIDLTPLTVALSIIGKGSAAHXXKVL
XXIYPKDKSALLDPKEVDEMIALMKNVGVSLGKSPGDIPLFIVKLFENIDKDKXNLISRE
EFLTEGARSPSLLTLLGIXXYKFXXFINFF*infffkffl*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
GKNSNFSKEEVANIYGEFNKFDKDGXXSFEIKEFVLFFKSKLXNYPEDNLNKLFDAFDSD
KSNTIDFKELTVALSIIGKGSAEDKLKVLFDIYDKDKSGILEKK---

---PSALTFNSNLPHYPAPLSPPLFDTSDSHQSNTIDLTPLTVALSIIGKGSAAHXXKVL
XXIYPKDKSALLDPKEVDEMIALMKNVGVSLGKSPGDIPLFIVKLFENIDKDKXNLISRE
EFLTEGARSPSLLTLLGIXXYKFXXFINFF*infffkffl*kk

Frame B:
vkiqisqkkklpismessinliktxxvvlk*knlfyslkvnfxtiqkii*inyltllili
kvtqliskn*llhypllvkvqlkin*rfslifmtktslef*rk---

---plllpltvtshtiqhlshppyltlltltkvtqlishh*llhypllvkvqlhixxrfs
xxfipktslpx*tpkklmk*ll**kmlvclwvnpqeispylllnylktlikixti*slek
nf*lkvpdhhhslpy*afxfinfxxl*iffk*ifflnffykkk

Frame C:
*kfkflkrrscqylwrvq*i**rrxx*f*nkricfil*k*tsklsrr*fk*ii*rf*f**
k*hn*fqrincciihyw*rfs*r*ikgsl*yl*qrqvwnfrek---

---lcsyl*q*pptlsstsltpli*hf*lspk*hn*shtincciihyw*rfsctsxkgsl
sxlsqrqvcpxrpqrs**ndcfnekcwcvfg*iprrypliyc*ii*kh**r*xqfnl*rr
ifn*rcqititpylirhfxl*ixxiykfflnkfff*iffikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA802 (SSA802Q) /CSM/SS/SSA8-A/SSA802Q.Seq.d/                        789   0.0
VSJ160 (VSJ160Q) /CSM/VS/VSJ1-C/VSJ160Q.Seq.d/                        565   e-160
VSK303 (VSK303Q) /CSM/VS/VSK3-A/VSK303Q.Seq.d/                        420   e-116
VHE865 (VHE865Q) /CSM/VH/VHE8-C/VHE865Q.Seq.d/                        234   2e-60
VHJ205 (VHJ205Q) /CSM/VH/VHJ2-A/VHJ205Q.Seq.d/                         42   0.013
VHG818 (VHG818Q) /CSM/VH/VHG8-A/VHG818Q.Seq.d/                         42   0.013
VSI787 (VSI787Q) /CSM/VS/VSI7-D/VSI787Q.Seq.d/                         40   0.051
VSF215 (VSF215Q) /CSM/VS/VSF2-A/VSF215Q.Seq.d/                         40   0.051
VSE268 (VSE268Q) /CSM/VS/VSE2-C/VSE268Q.Seq.d/                         40   0.051
VSD126 (VSD126Q) /CSM/VS/VSD1-B/VSD126Q.Seq.d/                         40   0.051
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014106|AE014106.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 31 of 57 of the complete genome.    36  7e-04  5
AX348578|AX348578.1 Sequence 36 from Patent WO0202807.            40  0.076  3
AX344181|AX344181.1 Sequence 28 from Patent WO0200926.            40  0.076  3
AX251767|AX251767.1 Sequence 28 from Patent WO0168911.            40  0.076  3
U44758|U44758.1 Human calmodulin 2 (CALM2 P4) pseudogene.         38  0.12  2
AZ675276|AZ675276.1 ENTIK85TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.12  3
BW135621|BW135621.1 Ciona intestinalis cDNA, clone:rcign040n14, 3' end, single read.    38  0.17  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.17  12
BW265500|BW265500.1 Ciona intestinalis cDNA, clone:cign040n14, 5' end, single read.    38  0.17  2
BU396557|BU396557.1 603510807F1 CSEQCHN57 Gallus gallus cDNA clone ChEST442n1 5', mRNA sequence.    46  0.66  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY655131_1(AY655131|pid:none) Dictyostelium discoideum NCS-1/fre...   196   9e-49
AY655129_1(AY655129|pid:none) Dictyostelium discoideum NCS-1/fre...    78   4e-13
AY655132_1(AY655132|pid:none) Dictyostelium discoideum NCS-1/fre...    70   1e-10
(Q6FLU4) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    64   4e-09
(Q6BWS8) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    64   4e-09
AF282385_1(AF282385|pid:none) Filobasidiella neoformans FK506-re...    64   7e-09
AJ301668_1(AJ301668|pid:none) Dictyostelium discoideum cnbA gene...    64   7e-09
CP000496_1005(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    64   7e-09
(Q9HDE1) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    64   7e-09
AB061864_1(AB061864|pid:none) Magnaporthe grisea MgNCS1 mRNA for...    63   1e-08
protein update 2009. 6. 8
PSORT 

 psg: 0.74  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA802 is nuc
5' end seq. ID SSA802F
5' end seq. 
>SSA802F.Seq
GGTAAAAATTCAAATTTCTCAAAAGAAGAAGTTGCCAATATCTATGGAGAGTTCAATAAA
TTTGATAAAGACGGANATNGTAGTTTTGAAATAAAAGAATTTGTTTTATTCTTTAAAAGT
AAACTTCNAAACTATCCAGAAGATAATTTAAATAAATTATTTGACGCTTTTGATTCTGAT
AAAAGTAACACAATTGATTTCAAAGAATTAACTGTTGCATTATCCATTATTGGTAAAGGT
TCAGCTGAAGATAAATTAAAGGTTCTCTTTGATATTTATGACAAAGACAAGTCTGGAATT
TTAGAGAAAAAA----------
Length of 5' end seq. 312
3' end seq. ID SSA802Z
3' end seq. 
>SSA802Z.Seq
----------CCCTCTGCTCTTACCTTTAACAGTAACCTCCCACACTATCCAGCACCTCT
CTCACCCCCCTTATTTGACACTTCTGACTCTCACCAAAGTAACACAATTGATCTCACACC
ATTAACTGTTGCATTATCCATTATTGGTAAAGGTTCAGCTGCACATCANTNAAAGGTTCT
CTNTCANATTTATCCCAAAGACAAGTCTGCCCTNTTAGACCCCAAAGAAGTTGATGAAAT
GATTGCTTTAATGAAAAATGTTGGTGTGTCTTTGGGTAAATCCCCAGGAGATATCCCCTT
ATTTATTGTTAAATTATTTGAAAACATTGATAAAGATAAANACAATTTAATCTCTAGAGA
AGAATTTTTAACTGAAGGTGCCAGATCACCATCACTCCTTACCTTATTAGGCATTTTNNT
TTATAAATTTTNNNNATTTATAAATTTTTTTTAAATAAATTTTTTTTTTAAATTTTTTTT
ATAAAAAAAAA
Length of 3' end seq. 481
Connected seq. ID SSA802P
Connected seq. 
>SSA802P.Seq
GGTAAAAATTCAAATTTCTCAAAAGAAGAAGTTGCCAATATCTATGGAGAGTTCAATAAA
TTTGATAAAGACGGANATNGTAGTTTTGAAATAAAAGAATTTGTTTTATTCTTTAAAAGT
AAACTTCNAAACTATCCAGAAGATAATTTAAATAAATTATTTGACGCTTTTGATTCTGAT
AAAAGTAACACAATTGATTTCAAAGAATTAACTGTTGCATTATCCATTATTGGTAAAGGT
TCAGCTGAAGATAAATTAAAGGTTCTCTTTGATATTTATGACAAAGACAAGTCTGGAATT
TTAGAGAAAAAA----------CCCTCTGCTCTTACCTTTAACAGTAACCTCCCACACTA
TCCAGCACCTCTCTCACCCCCCTTATTTGACACTTCTGACTCTCACCAAAGTAACACAAT
TGATCTCACACCATTAACTGTTGCATTATCCATTATTGGTAAAGGTTCAGCTGCACATCA
NTNAAAGGTTCTCTNTCANATTTATCCCAAAGACAAGTCTGCCCTNTTAGACCCCAAAGA
AGTTGATGAAATGATTGCTTTAATGAAAAATGTTGGTGTGTCTTTGGGTAAATCCCCAGG
AGATATCCCCTTATTTATTGTTAAATTATTTGAAAACATTGATAAAGATAAANACAATTT
AATCTCTAGAGAAGAATTTTTAACTGAAGGTGCCAGATCACCATCACTCCTTACCTTATT
AGGCATTTTNNTTTATAAATTTTNNNNATTTATAAATTTTTTTTAAATAAATTTTTTTTT
TAAATTTTTTTTATAAAAAAAAA
Length of connected seq. 793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -