>SSA794 (SSA794Q) /CSM/SS/SSA7-D/SSA794Q.Seq.d/
XXXXXXXXXXTGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCCTGTAAAAAAT
TCGATAAGGATGGTGATGATTGTATTGCTTACAAAAACGTCGAAGCTTCTAATCTTTTAA
CCTCAAATTCAACCAAATGTGCATACATGTATTTCAACTATGCTTATGCCAATAACCCAG
CTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCAATGGTAAATGTAGAATTTGTA
ATTATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAGGTGCCCCAAGAACTTGTGTAT
TCCCAGGTAAATTCGCAACTGTCCACTCTTCAAGCTGGTCTGCTGGTAGATACTATGAAG
AACCAATCCAAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATTTTAGCTTTCC
ACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTATTTCTTTTTT
TTGTAATTAATACTATATAATGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCC
TGTAAAAAATTCGATAAGGATGGTGATGATTGTATTGCTTACAAAAACGTCGAAGCTTCT
AATCTTTTAACCTCAAATTCAACCAAATGTGCATACATGTATTTCAACTATGCTTATGCC
AATAACCCAGCTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCAATGGTAAATGT
AGAATTTGTAATTATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAGGTGCCCCAAGA
ACTTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTCTTCAAGCTGGTCTGCTGGTAGA
TACTATGAAGAACCAATCCAAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATT
TTAGCTTTCCACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTA
TTTCTTTTTTTTGTAATTAATACTATATAA

---fikyfrsq*iwfpvknsirmvmivlltktskllif*pqiqpnvhtcistmlmpitql
vn*mltikvlvsmvnvefvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmkn
qskfg*qfssv*lf*f*lstswvs*rnnkyrfvk*yfffl*LILYNVHQIFSISMNLVPC
KKFDKDGDDCIAYKNVEASNLLTSNSTKCAYMYFNYAYANNPAGQLNVDYQGTCVNGKCR
ICNYANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLIL
AFHVMGFLKK**isickivflffvinti*

Frame A:
---vhqifsismnlvpckkfdkdgddciayknveasnlltsnstkcaymyfnyayannpa
gqlnvdyqgtcvngkcricnyanggsytaegkgaprtcvfpgkfatvhssswsagryyee
piqvwlaiffclivlilafhvmgflkk**isickivflffvinti*cssnifdlnefgsl
*kir*gw**lyclqkrrsf*sfnlkfnqmcihvfqlclcq*pswsikc*lsrylcqw*m*
nl*lc*rwflhc*r*rcpknlcipr*irncplfklvcw*il*rtnpslvsnfllfncfnf
sfprhgflkeiinidl*nsisffcn*yyi


Frame B:
---fikyfrsq*iwfpvknsirmvmivlltktskllif*pqiqpnvhtcistmlmpitql
vn*mltikvlvsmvnvefvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmkn
qskfg*qfssv*lf*f*lstswvs*rnnkyrfvk*yfffl*LILYNVHQIFSISMNLVPC
KKFDKDGDDCIAYKNVEASNLLTSNSTKCAYMYFNYAYANNPAGQLNVDYQGTCVNGKCR
ICNYANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLIL
AFHVMGFLKK**isickivflffvinti*


Frame C:
---ssnifdlnefgsl*kir*gw**lyclqkrrsf*sfnlkfnqmcihvfqlclcq*psw
sikc*lsrylcqw*m*nl*lc*rwflhc*r*rcpknlcipr*irncplfklvcw*il*rt
npslvsnfllfncfnfsfprhgflkeiinidl*nsisffcn*yyimfikyfrsq*iwfpv
knsirmvmivlltktskllif*pqiqpnvhtcistmlmpitqlvn*mltikvlvsmvnve
fvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmknqskfg*qfssv*lf*f*
lstswvs*rnnkyrfvk*yfffl*lily

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA794 (SSA794Q) /CSM/SS/SSA7-D/SSA794Q.Seq.d/                       1848   0.0
SSB156 (SSB156Q) /CSM/SS/SSB1-C/SSB156Q.Seq.d/                        884   0.0
SSL239 (SSL239Q) /CSM/SS/SSL2-B/SSL239Q.Seq.d/                        462   e-129
FC-IC0108 (FC-IC0108Q) /CSM/FC-IC/FC-IC0108Q.Seq.d/                   363   3e-99
SSL240 (SSL240Q) /CSM/SS/SSL2-B/SSL240Q.Seq.d/                        244   2e-63
SSG129 (SSG129Q) /CSM/SS/SSG1-B/SSG129Q.Seq.d/                         44   0.004
VSI312 (VSI312Q) /CSM/VS/VSI3-A/VSI312Q.Seq.d/                         42   0.016
VSG309 (VSG309Q) /CSM/VS/VSG3-A/VSG309Q.Seq.d/                         42   0.016
VSF890 (VSF890Q) /CSM/VS/VSF8-D/VSF890Q.Seq.d/                         42   0.016
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                         42   0.016

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF175768|AF175768.1 Dictyostelium discoideum SAPLIP C protein mRNA, complete cds.    48  0.21  1
AV674350|AV674350.1 Ciona intestinalis cDNA clone:citb15e19 : 5' end, single read.    48  0.21  1
BX511193|BX511193.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-149J18.    48  0.21  2
AC106464|AC106464.3 Rattus norvegicus clone CH230-209K23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48  0.51  3
AJ512751|AJ512751.1 Anopheles dirus A mitochondrial partial COII gene for cytochrome  oxidase subunit II.    46  0.82  1
U94289|U94289.1 Anopheles balabacensis cytochrome c oxidase subunit II (COII) gene, mitochondrial gene encoding mitochondrial protein, partial cds.    46  0.82  1
AF417743|AF417743.1 Anopheles dirus cytochrome c oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    46  0.82  1
AX345696|AX345696.1 Sequence 767 from Patent WO0200928.           36  0.83  2
BW083212|BW083212.1 Ciona intestinalis cDNA, clone:rcieg091a03, 3' end, single read.    38  0.83  2
AV953241|AV953241.1 Ciona intestinalis cDNA, clone:cicl01m04, 5' end, single read.    38  0.86  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 1,528,779,843

 psg: 0.88  gvh: 0.36  alm: 0.14  top: 0.73  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSA794 is cyt

>SSA794Z.Seq
----------TGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCCTGTAAAAAAT
TCGATAAGGATGGTGATGATTGTATTGCTTACAAAAACGTCGAAGCTTCTAATCTTTTAA
CCTCAAATTCAACCAAATGTGCATACATGTATTTCAACTATGCTTATGCCAATAACCCAG
CTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCAATGGTAAATGTAGAATTTGTA
ATTATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAGGTGCCCCAAGAACTTGTGTAT
TCCCAGGTAAATTCGCAACTGTCCACTCTTCAAGCTGGTCTGCTGGTAGATACTATGAAG
AACCAATCCAAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATTTTAGCTTTCC
ACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTATTTCTTTTTT
TTGTAATTAATACTATATAATGTTCATCAAATATTTTCGATCTCAATGAATTTGGTTCCC
TGTAAAAAATTCGATAAGGATGGTGATGATTGTATTGCTTACAAAAACGTCGAAGCTTCT
AATCTTTTAACCTCAAATTCAACCAAATGTGCATACATGTATTTCAACTATGCTTATGCC
AATAACCCAGCTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCAATGGTAAATGT
AGAATTTGTAATTATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAGGTGCCCCAAGA
ACTTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTCTTCAAGCTGGTCTGCTGGTAGA
TACTATGAAGAACCAATCCAAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATT
TTAGCTTTCCACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTA
TTTCTTTTTTTTGTAATTAATACTATATAA