>SSA778 (SSA778Q) /CSM/SS/SSA7-D/SSA778Q.Seq.d/
XXXXXXXXXXGAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAA
TCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAACTTAACCCATCCT
TAGGTNTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAG
TTAGAGGTATCCTCGAAGTTTACTCNACCTATCGTAATTTCTTTTCTGATGGTGTCAACA
ACGAGAAATCANNGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTT
TTGAAGATCAATATGGTTATGGTGTNTTTTACGCTTACATTAAATTAAGAGAACAAGAAA
TTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATC
AANACATTCCAATNTTTTAAAAAAATAACTATATNTAATTATTAAAAAAAATAAAAAAAA
AAATAAAAAAAAAATAAAATAAAATAAAACAATAATAAAAAAAAAAAAAAAAAA

---SDILKFEADRRSINITINSFGATELSKDDREKLNPSLGXLYPEGTSKLGKAEDVDQV
RGILEVYSTYRNFFSDGVNNEKSXEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEI
RNIVWIAECISQNMKQKMNQXIPXF*knnyx*llkkikkkikkk*nkikq**kkkkk

Frame A:
---SDILKFEADRRSINITINSFGATELSKDDREKLNPSLGXLYPEGTSKLGKAEDVDQV
RGILEVYSTYRNFFSDGVNNEKSXEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEI
RNIVWIAECISQNMKQKMNQXIPXF*knnyx*llkkikkkikkk*nkikq**kkkkk


Frame B:
---vif*slkqivdqsisqsivlvqlnsqrmivknlthp*vfytqkvlanlvklktlikl
evsskftxpivisflmvsttrnxxkthslnmkft*ivwllkinmvmvxftltln*enkkl
ei*fgllnvlvki*nkk*ixtfqxfkkitixny*kk*kkk*kknkik*nnnkkkkkk


Frame C:
---*yfkv*srs*inqyhnq*fwcn*tlkg*s*kt*pilrxfiprry*qtw*s*rr*ss*
ryprsllxls*flf*wcqqreixgrlil*t*sslksygf*rsiwlwcxlrlh*ikrtrn*
kysldc*my*skyetknesxhsnxlkk*lyxiikknkkknkkkik*nktiikkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA778 (SSA778Q) /CSM/SS/SSA7-D/SSA778Q.Seq.d/                        809   0.0
VSE491 (VSE491Q) /CSM/VS/VSE4-D/VSE491Q.Seq.d/                        793   0.0
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                        793   0.0
SSM519 (SSM519Q) /CSM/SS/SSM5-A/SSM519Q.Seq.d/                        793   0.0
SSK753 (SSK753Q) /CSM/SS/SSK7-C/SSK753Q.Seq.d/                        793   0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                        793   0.0
SSK423 (SSK423Q) /CSM/SS/SSK4-A/SSK423Q.Seq.d/                        793   0.0
SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/                        793   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                        793   0.0
SSH558 (SSH558Q) /CSM/SS/SSH5-C/SSH558Q.Seq.d/                        793   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   791  0.0  1
U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.   775  0.0  1
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76  4e-14  2
AI067312|AI067312.1 EST208990 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS44 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  7e-05  2
AI067329|AI067329.1 EST209007 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS63 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  8e-05  2
AI067953|AI067953.1 EST209642 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH20 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  9e-05  2
AI067936|AI067936.1 EST209624 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG92 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  1e-04  2
BU776849|BU776849.1 SJEDDD08 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
BU768904|BU768904.1 SJEBZB10 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
BU715793|BU715793.1 SJM2ABF05 SJM Schistosoma japonicum cDNA, mRNA sequence.    48  0.11  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   276   2e-73
(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   276   2e-73
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2;        ...   167   2e-40
BT081086_1(BT081086|pid:none) Caligus clemensi clone ccle-evs-51...   161   8e-39
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   161   1e-38
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   160   1e-38
AY648766_1(AY648766|pid:none) Danio rerio v-ATPase AC39 subunit ...   160   2e-38
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   160   2e-38
(P61420) RecName: Full=V-type proton ATPase subunit d 1;        ...   160   2e-38
A32123(A32123)H+-exporting ATPase (EC 3.6.3.6) polypeptide IV, v...   160   2e-38

 psg: 0.85  gvh: 0.29  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSA778 is nuc

>SSA778Z.Seq
----------GAGTGATATTTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAA
TCAATAGTTTTGGTGCAACTGAACTCTCAAAGGATGATCGTGAAAAACTTAACCCATCCT
TAGGTNTTTTATACCCAGAAGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAG
TTAGAGGTATCCTCGAAGTTTACTCNACCTATCGTAATTTCTTTTCTGATGGTGTCAACA
ACGAGAAATCANNGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTT
TTGAAGATCAATATGGTTATGGTGTNTTTTACGCTTACATTAAATTAAGAGAACAAGAAA
TTAGAAATATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATC
AANACATTCCAATNTTTTAAAAAAATAACTATATNTAATTATTAAAAAAAATAAAAAAAA
AAATAAAAAAAAAATAAAATAAAATAAAACAATAATAAAAAAAAAAAAAAAAAA