>SSA774 (SSA774Q) /CSM/SS/SSA7-D/SSA774Q.Seq.d/
AATACACACATAAGAACACAGAGGANAAATGAGNTAATAATAATAAGATATTTCAATTTA
AACTTGTATTATTNNNCGAAGCAGCCGTAGGCANNAGNNCTTTAGTATTGAGATTTGTTC
GTGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACAAACAG
TTTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGAACGTT
ATCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATA
TTAGAAGTGAAGATTCATTCGAAAGAGCAATCAAATGGGTTAAAGAATTACAAAGACAAG
GTAGTCCAAATATTGTTATAGCATTAGCAGGTAATAAATTAGATCTTGCTGCTAAACGTA
AANNTGAAACAGCTGAAGCACAACAATATNCCNAANAAAATGGACTTCTTTTTATGGAAA
CATCAGCCAAAACATCACAAAATGTAAATGAACTTTTTGTAGAGATTGCTAAAAAACTTC
CAAAAACACCAACCACTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGATAATG
GTAACACTGGAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATA
ATAATTTTTAACAAAAACCCATCAAAAAAAAAAAAAAAAAACAACATAACATAAAATAAC
ATAACACAAACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCATAACTT
CAACATCAACATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAAACAAA
ATAAAAAAAAAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAA
AACACAAAA

ythkntexk*XNNNKIFQFKLVLXXEAAVGXXXLVLRFVRGHFLDYQESTIGAAFLAQTV
CLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQG
SPNIVIALAGNKLDLAAKRKXETAEAQQYXXXNGLLFMETSAKTSQNVNELFVEIAKKLP
KTPTTRPGSGRVAIAPIDNGNTGKKNKCCN**nnkkpqynnf*qkpikkkkkkqhnik*h
ntnnklntfkkqlkhlcitststststiin*kht*fikqnkkkknpeknkk*kk*klksk
hk

Frame A:
nthirtqrxnexiiiryfnlnlyyxxkqp*axxl*y*dlfvdtf*iikkvl*vlhf*hkq
fv*milqlnlkfgiqlvknviih*hqciivvhkqqslfmilevkihskeqsnglknykdk
vvqill*h*qvin*illlnvxxkqlkhnnxpxkmdfflwkhqpkhhkm*mnfl*rllknf
qkhqpldqvqee*qllq*imvtlerktnvvtnkiiknhniiifnknpskkkkknnit*nn
itqttnsihlknnsntya*lqhqhqhqq*stknthnllnkikkkkiqkkiknkknkn*nq
ntk


Frame B:
iht*ehrgxmx****disi*tciixrssrrxxxfsieicswtlfrlsrkyyrccifstns
lfk*yys*i*nlgyswsrtlsyistnvlswctssnrcl*y*k*rfirksnqmg*ritktr
*skycysisr**irscc*t*x*ns*sttixxxkwtsfygnisqnitkck*tfcrdc*kts
kntnh*trfrkssncsnr*w*hwkekqml*lik**ktti**fltkthqkkkkktt*hkit
*hkqqtqyi*kttqtpmhnfninininnnqlkthiiy*tk*kkkksrkk*kikkiktkik
tq


Frame C:
ythkntexk*XNNNKIFQFKLVLXXEAAVGXXXLVLRFVRGHFLDYQESTIGAAFLAQTV
CLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQG
SPNIVIALAGNKLDLAAKRKXETAEAQQYXXXNGLLFMETSAKTSQNVNELFVEIAKKLP
KTPTTRPGSGRVAIAPIDNGNTGKKNKCCN**nnkkpqynnf*qkpikkkkkkqhnik*h
ntnnklntfkkqlkhlcitststststiin*kht*fikqnkkkknpeknkk*kk*klksk
hk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA774 (SSA774Q) /CSM/SS/SSA7-D/SSA774Q.Seq.d/                       1086   0.0
VSB109 (VSB109Q) /CSM/VS/VSB1-A/VSB109Q.Seq.d/                       1031   0.0
SFE445 (SFE445Q) /CSM/SF/SFE4-B/SFE445Q.Seq.d/                        930   0.0
VSC545 (VSC545Q) /CSM/VS/VSC5-B/VSC545Q.Seq.d/                        916   0.0
SFG815 (SFG815Q) /CSM/SF/SFG8-A/SFG815Q.Seq.d/                        894   0.0
VFI464 (VFI464Q) /CSM/VF/VFI4-C/VFI464Q.Seq.d/                        866   0.0
SFE652 (SFE652Q) /CSM/SF/SFE6-C/SFE652Q.Seq.d/                        852   0.0
CHD222 (CHD222Q) /CSM/CH/CHD2-A/CHD222Q.Seq.d/                        835   0.0
CFH437 (CFH437Q) /CSM/CF/CFH4-B/CFH437Q.Seq.d/                        827   0.0
SFF812 (SFF812Q) /CSM/SF/SFF8-A/SFF812Q.Seq.d/                        811   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   408  0.0  7
BI507360|BI507360.1 BB170006B10A10 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170006B10A10 5', mRNA sequence.   159  1e-46  3
BI504037|BI504037.1 BB170029B20A11 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170029B20A11 5', mRNA sequence.   159  2e-46  3
BI507335|BI507335.1 BB170003A20A10 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170003A20A10 5', mRNA sequence.   159  3e-46  3
BG661487|BG661487.1 kx02e06.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RB5B_HUMAN P35239 RAS-RELATED PROTEIN RAB-5B. ;, mRNA sequence.   100  6e-30  3
AA048654|AA048654.1 mj33e03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone IMAGE:477916 5' similar to gb:M28215 RAS-RELATED PROTEIN RAB-5A (HUMAN);, mRNA sequence.   111  5e-29  3
AA144376|AA144376.1 mr15c10.r1 Soares mouse 3NbMS Mus musculus cDNA clone IMAGE:597522 5' similar to gb:M28215 RAS-RELATED PROTEIN RAB-5A (HUMAN);, mRNA sequence.   111  6e-29  3
W89699|W89699.1 mf79h10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone IMAGE:420547 5' similar to gb:M28215 RAS-RELATED PROTEIN RAB-5A (HUMAN);, mRNA sequence.   111  6e-29  3
AX305550|AX305550.1 Sequence 301 from Patent WO0188188.          111  6e-29  3
CD807672|CD807672.1 UI-M-GW0-cip-b-12-0-UI.r1 NIH_BMAP_GW0 Mus musculus cDNA clone IMAGE:30538307 5', mRNA sequence.   111  1e-28  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86JP3) RecName: Full=Ras-related protein Rab-5A;  &AC115599_18...   340   5e-92
BC080959_1(BC080959|pid:none) Xenopus tropicalis RAB5A, member R...   253   6e-66
AF072935_1(AF072935|pid:none) Rattus norvegicus small GTP-bindin...   253   6e-66
AK150346_1(AK150346|pid:none) Mus musculus bone marrow macrophag...   253   8e-66
(Q0IIG7) RecName: Full=Ras-related protein Rab-5A;  &BC122651_1(...   253   8e-66
(P18066) RecName: Full=Ras-related protein Rab-5A;  &(P61271) Re...   253   8e-66
(P20339) RecName: Full=Ras-related protein Rab-5A;  &AF464088_1(...   253   8e-66
(Q06AU6) RecName: Full=Ras-related protein Rab-5A;  &DQ917629_1(...   252   1e-65
I38703(I38703;G01590) ras-related small GTP binding protein Rab5...   251   2e-65
BT044620_1(BT044620|pid:none) Salmo salar clone ssal-rgf-001-033...   251   2e-65

 psg: 0.79  gvh: 0.62  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSA774 is nuc

>SSA774F.Seq
AATACACACATANGAACACAGAGGAGAAATGAGGTAATAATAATAAGATATTTCAATTTA
NNCTTGTATTATTGGGCGAACAGCCGTAGGCAGGNGGGCTTTANTATTGAGATTTGTTCG
TGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACAAACAGT
TTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGAACGTTA
TCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATAT
TAGAAGTGAAGATTCATTCGAAAGACAATCAAATGGGTTAAAGAATTACAAAGACAAGGT
AGCCAAATATTGNTATAGCATTACAGGTAATAAATTAGATCTTGCTGCTAAACGTNAAAG
TGAACAGCTGAAGCACNCAATTTCCCAAAAAAATGGACTTCTTTTATGGAAACATNACCA
AAACATCNCAAAATGTAAATGAACTTTTTGTAGAGATTGNTAAAAAANTTCCAAAAACAC
CAACCANTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGATAATGGTAACACTG
GAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATAATAATTTTT
AACAAAAACCCNTCAAAAAAAAAAAAAAAAAACAACATAACATAAAATAACATAACACAA
ACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCATAACTTCAACATCAA
CATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAAACAAAATAAAAAAA
AAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAAAACAC

>SSA774Z.Seq
AATACACACATAAGAACACAGAGGAAAAATGAATAATAATAATAAGATATTTCAATTTAA
ACTTGTATTATTAAACGAAGCAGCCGTAGGCAAAAGTTCTTTAGTATTGAGATTTGTTCG
TGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACAAACAGT
TTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGAACGTTA
TCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATAT
TAGAAGTGAAGATTCATTCGAAAGAGCAATCAAATGGGTTAAAGAATTACAAAGACAAGG
TAGTCCAAATATTGTTATAGCATTAGCAGGTAATAAATTAGATCTTGCTGCTAAACGTAA
AGTTGAAACAGCTGAAGCACAACAATATGCCGAAGAAAATGGACTTCTTTTTATGGAAAC
ATCAGCCAAAACATCACAAAATGTAAATGAACTTTTTGTAGAGATTGCTAAAAAACTTCC
AAAAACACCAACCACTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGATAATGG
TAACACTGGAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATAA
TAATTTTTAACAAAAACCCATCAAAAAAAAAAAAAAAAAACAACATAACATAAAATAACA
TAACACAAACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCATAACTTC
AACATCAACATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAAACAAAA
TAAAAAAAAAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAAA
ACACAAAA

>SSA774P.Seq
AATACACACATANGAACACAGAGGAGAAATGAGGTAATAATAATAAGATATTTCAATTTA
NNCTTGTATTATTGGGCGAACAGCCGTAGGCAGGNGGGCTTTANTATTGAGATTTGTTCG
TGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACAAACAGT
TTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGAACGTTA
TCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATAT
TAGAAGTGAAGATTCATTCGAAAGACAATCAAATGGGTTAAAGAATTACAAAGACAAGGT
AGCCAAATATTGNTATAGCATTACAGGTAATAAATTAGATCTTGCTGCTAAACGTNAAAG
TGAACAGCTGAAGCACNCAATTTCCCAAAAAAATGGACTTCTTTTATGGAAACATNACCA
AAACATCNCAAAATGTAAATGAACTTTTTGTAGAGATTGNTAAAAAANTTCCAAAAACAC
CAACCANTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGATAATGGTAACACTG
GAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATAATAATTTTT
AACAAAAACCCNTCAAAAAAAAAAAAAAAAAACAACATAACATAAAATAACATAACACAA
ACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCATAACTTCAACATCAA
CATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAAACAAAATAAAAAAA
AAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAAAACAC----
------AATACACACATAAGAACACAGAGGAAAAATGAATAATAATAATAAGATATTTCA
ATTTAAACTTGTATTATTAAACGAAGCAGCCGTAGGCAAAAGTTCTTTAGTATTGAGATT
TGTTCGTGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACA
AACAGTTTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGA
ACGTTATCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTA
TGATATTAGAAGTGAAGATTCATTCGAAAGAGCAATCAAATGGGTTAAAGAATTACAAAG
ACAAGGTAGTCCAAATATTGTTATAGCATTAGCAGGTAATAAATTAGATCTTGCTGCTAA
ACGTAAAGTTGAAACAGCTGAAGCACAACAATATGCCGAAGAAAATGGACTTCTTTTTAT
GGAAACATCAGCCAAAACATCACAAAATGTAAATGAACTTTTTGTAGAGATTGCTAAAAA
ACTTCCAAAAACACCAACCACTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGA
TAATGGTAACACTGGAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACA
ATATAATAATTTTTAACAAAAACCCATCAAAAAAAAAAAAAAAAAACAACATAACATAAA
ATAACATAACACAAACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCAT
AACTTCAACATCAACATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAA
ACAAAATAAAAAAAAAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAA
ATCAAAACACAAAA

>SSA774E.Seq
AATACACACATAAGAACACAGAGGANAAATGAGNTAATAATAATAAGATATTTCAATTTA
AACTTGTATTATTNNNCGAAGCAGCCGTAGGCANNAGNNCTTTAGTATTGAGATTTGTTC
GTGGACACTTTTTAGATTATCAAGAAAGTACTATAGGTGCTGCATTTTTAGCACAAACAG
TTTGTTTAAATGATACTACAGTTAAATTTGAAATTTGGGATACAGCTGGTCAAGAACGTT
ATCATACATTAGCACCAATGTATTATCGTGGTGCACAAGCAGCAATCGTTGTTTATGATA
TTAGAAGTGAAGATTCATTCGAAAGAGCAATCAAATGGGTTAAAGAATTACAAAGACAAG
GTAGTCCAAATATTGTTATAGCATTAGCAGGTAATAAATTAGATCTTGCTGCTAAACGTA
AANNTGAAACAGCTGAAGCACAACAATATNCCNAANAAAATGGACTTCTTTTTATGGAAA
CATCAGCCAAAACATCACAAAATGTAAATGAACTTTTTGTAGAGATTGCTAAAAAACTTC
CAAAAACACCAACCACTAGACCAGGTTCAGGAAGAGTAGCAATTGCTCCAATAGATAATG
GTAACACTGGAAAGAAAAACAAATGTTGTAACTAATAAAATAATAAAAAACCACAATATA
ATAATTTTTAACAAAAACCCATCAAAAAAAAAAAAAAAAAACAACATAACATAAAATAAC
ATAACACAAACAACAAACTCAATACATTTAAAAAACAACTCAAACACCTATGCATAACTT
CAACATCAACATCAACATCAACAATAATCAACTAAAAACACACATAATTTATTAAACAAA
ATAAAAAAAAAAAAAATCCAGAAAAAAATAAAAAATAAAAAAAATAAAAACTAAAATCAA
AACACAAAA