SSA756
Library SS
(Link to library)
Clone ID SSA756
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04465-1
Original site URL
Representative seq. ID SSA756P
(Link to Original site)
Representative DNA sequence
>SSA756 (SSA756Q) /CSM/SS/SSA7-C/SSA756Q.Seq.d/
GTCTAAATTTGTACATATATTAATTTTAAATTTGTTAGACAGAATTTACAGGTTGGAAAA
AAAAAAAAAAAAAAGAAGAAAGATATAAGAAAAAGATGGCCACAATTACAAATGCAGACC
CATATAAAATATTATTTGAACAAGATATAAAAACAGCAACCAATATTCCAATGGTTACAT
TCATTTCAAATGTTGAAGAATTTGTTAAAGATAAAGATGTTGAAAATGTTTTCAAXXXXX
XXXXXCATGTTGAAAATAAATNTAATGAATCATTTTCAGTACAATATGAACTTTCAGAAG
GTGTTTATTTTTCAGCACAAGTAAATGAACCAAAATCAATTTATTTATGGTTAGGTGCAA
ATGTAATGTTGGAATATTCATTTGAAGAAGCAAGAGAGGTATTAAGAAAGAATAAAGATA
CAGTCGATCGTCAACTTAGTGAGAGCATTCAAGATTTAGGTTTTGTAAAGGATCAAATCA
CTACAACTGATGTTAACGTTTCACGTGTTTACAATTATGATATCATTCAAAAAAGAAAAT
TAAAACTATCAGGTAAAACTGAAGAAGAGGAAAAATAAAAAAAAAAAAAATAAAAAAAGT
AAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATATAATTAACTTTAAAAAAAAAAAA
TA
sequence update 1999. 1.18
Translated Amino Acid sequence
lnlyiy*f*ic*TEFTGWKKKKKKEERYKKKMATITNADPYKILFEQDIKTATNIPMVTF
ISNVEEFVKDKDVENVF---

---HVENKXNESFSVQYELSEGVYFSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNK
DTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKRKLKLSGKTEEEEK*kkkk*k
k*kkkk*kk*k*kyn*l*kkki


Translated Amino Acid sequence (All Frames)
Frame A:
v*ictyinfkfvrqnlqvgkkkkkkkkdirkrwpqlqmqthikyylnki*kqqpifqwlh
sfqmlknllkikmlkmfs---

---HVENKXNESFSVQYELSEGVYFSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNK
DTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKRKLKLSGKTEEEEK*kkkk*k
k*kkkk*kk*k*kyn*l*kkki

Frame B:
skfvhililnlldriyrlekkkkkrrki*ekdghnykcrpi*nii*tryknsnqysngyi
hfkc*ric*r*rc*kcfq---

---mlkinxmnhfqynmnfqkvfifqhk*mnqnqfiyg*vqm*cwnihlkkqery*erik
iqsivnlvrafki*vl*rikslqlmltfhvftimisfkken*nyqvklkkrknkkkknkk
skkkknkksknkniinfkkkk

Frame C:
lnlyiy*f*ic*TEFTGWKKKKKKEERYKKKMATITNADPYKILFEQDIKTATNIPMVTF
ISNVEEFVKDKDVENVF---

---c*k*x**iifsti*tfrrclffstsk*tkinlfmvrckcnvgifi*rskrgikke*r
ysrsst**ehsrfrfckgsnhyn*c*rftclql*yhskkkiktir*n*rrgkikkkkikk
vkkkkikkvkiki*ltlkkkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA756 (SSA756Q) /CSM/SS/SSA7-C/SSA756Q.Seq.d/ 833 0.0
VSE765 (VSE765Q) /CSM/VS/VSE7-C/VSE765Q.Seq.d/ 537 e-152
VSE760 (VSE760Q) /CSM/VS/VSE7-C/VSE760Q.Seq.d/ 537 e-152
VSA801 (VSA801Q) /CSM/VS/VSA8-A/VSA801Q.Seq.d/ 537 e-152
SSE728 (SSE728Q) /CSM/SS/SSE7-B/SSE728Q.Seq.d/ 537 e-152
SSJ203 (SSJ203Q) /CSM/SS/SSJ2-A/SSJ203Q.Seq.d/ 498 e-140
VSJ381 (VSJ381Q) /CSM/VS/VSJ3-D/VSJ381Q.Seq.d/ 42 0.011
VSG334 (VSG334Q) /CSM/VS/VSG3-B/VSG334Q.Seq.d/ 42 0.011
VSG195 (VSG195Q) /CSM/VS/VSG1-D/VSG195Q.Seq.d/ 42 0.011
SSL655 (SSL655Q) /CSM/SS/SSL6-C/SSL655Q.Seq.d/ 42 0.011

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AI730233|AI730233.1 BNLGHi6413 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to HYPOTHETICAL 20.9 KD PROTEIN T06G6.9 IN, mRNA sequence. 50 0.035 1
BQ405182|BQ405182.1 GA__Ed0079F05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0079F05f, mRNA sequence. 50 0.035 1
BQ402737|BQ402737.1 GA__Ed0051C10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0051C10r, mRNA sequence. 50 0.035 1
BH920636|BH920636.1 odh75g09.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 50 0.035 1
BQ413860|BQ413860.1 GA__Ed0079F05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0079F05r, mRNA sequence. 50 0.035 1
BQ402736|BQ402736.1 GA__Ed0051C10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0051C10f, mRNA sequence. 50 0.035 1
AY163547|AY163547.1 Varroa destructor mitochondrion, complete genome. 36 0.13 5
AC112153|AC112153.3 Mus musculus chromosome UNK clone RP24-93G11, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.14 1
AJ493124|AJ493124.1 Varroa destructor complete mitochondrial genome. 36 0.17 5
AC117812|AC117812.3 Mus musculus clone RP24-571E8, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 0.39 5
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF087700_1(EF087700|pid:none) Picea sitchensis clone WS02736_B07... 100 3e-20
AM494963_140(AM494963|pid:none) Leishmania braziliensis chromoso... 94 4e-18
CP001333_264(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 94 4e-18
CR954212_32(CR954212|pid:none) Ostreococcus tauri strain OTTH059... 94 5e-18
AM502244_135(AM502244|pid:none) Leishmania infantum chromosome 26. 93 6e-18
(P57741) RecName: Full=Probable prefoldin subunit 3; &AB023033_... 91 2e-17
(O18054) RecName: Full=Probable prefoldin subunit 3; &T24621(T2... 91 2e-17
CT005265_137(CT005265|pid:none) Leishmania major strain Friedlin... 91 3e-17
AK059971_1(AK059971|pid:none) Oryza sativa Japonica Group cDNA c... 91 3e-17
BT039206_1(BT039206|pid:none) Zea mays full-length cDNA clone ZM... 90 7e-17
protein update 2009. 6. 8
PSORT

psg: 0.09 gvh: 0.29 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSA756 is nuc

5' end seq. ID SSA756F
5' end seq.
>SSA756F.Seq
GTCTAAATTTGTACATATATTAATTTTAAATTTGTTAGACAGAATTTACAGGTTGGAAAA
AAAAAAAAAAAAAAGAAGAAAGATATAAGAAAAAGATGGCCACAATTACAAATGCAGACC
CATATAAAATATTATTTGAACAAGATATAAAAACAGCAACCAATATTCCAATGGTTACAT
TCATTTCAAATGTTGAAGAATTTGTTAAAGATAAAGATGTTGAAAATGTTTTCAA-----
-----
Length of 5' end seq. 235
3' end seq. ID SSA756Z
3' end seq.
>SSA756Z.Seq
----------CATGTTGAAAATAAATNTAATGAATCATTTTCAGTACAATATGAACTTTC
AGAAGGTGTTTATTTTTCAGCACAAGTAAATGAACCAAAATCAATTTATTTATGGTTAGG
TGCAAATGTAATGTTGGAATATTCATTTGAAGAAGCAAGAGAGGTATTAAGAAAGAATAA
AGATACAGTCGATCGTCAACTTAGTGAGAGCATTCAAGATTTAGGTTTTGTAAAGGATCA
AATCACTACAACTGATGTTAACGTTTCACGTGTTTACAATTATGATATCATTCAAAAAAG
AAAATTAAAACTATCAGGTAAAACTGAAGAAGAGGAAAAATAAAAAAAAAAAAAATAAAA
AAAGTAAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATATAATTAACTTTAAAAAAA
AAAAATA
Length of 3' end seq. 417
Connected seq. ID SSA756P
Connected seq.
>SSA756P.Seq
GTCTAAATTTGTACATATATTAATTTTAAATTTGTTAGACAGAATTTACAGGTTGGAAAA
AAAAAAAAAAAAAAGAAGAAAGATATAAGAAAAAGATGGCCACAATTACAAATGCAGACC
CATATAAAATATTATTTGAACAAGATATAAAAACAGCAACCAATATTCCAATGGTTACAT
TCATTTCAAATGTTGAAGAATTTGTTAAAGATAAAGATGTTGAAAATGTTTTCAA-----
-----CATGTTGAAAATAAATNTAATGAATCATTTTCAGTACAATATGAACTTTCAGAAG
GTGTTTATTTTTCAGCACAAGTAAATGAACCAAAATCAATTTATTTATGGTTAGGTGCAA
ATGTAATGTTGGAATATTCATTTGAAGAAGCAAGAGAGGTATTAAGAAAGAATAAAGATA
CAGTCGATCGTCAACTTAGTGAGAGCATTCAAGATTTAGGTTTTGTAAAGGATCAAATCA
CTACAACTGATGTTAACGTTTCACGTGTTTACAATTATGATATCATTCAAAAAAGAAAAT
TAAAACTATCAGGTAAAACTGAAGAAGAGGAAAAATAAAAAAAAAAAAAATAAAAAAAGT
AAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATATAATTAACTTTAAAAAAAAAAAA
TA
Length of connected seq. 652
Full length Seq ID -
Full length Seq. -
Length of full length seq. -