SSA746
Library SS
(Link to library)
Clone ID SSA746
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16307-1
Original site URL
Representative seq. ID SSA746E
(Link to Original site)
Representative DNA sequence
>SSA746 (SSA746Q) /CSM/SS/SSA7-B/SSA746Q.Seq.d/
AAATAATTTCCCATCAGGTTTATTAGATAATGAAACGAGAGAAGCTGTAGATTTCATGGT
TGATCAATTGGAAACTTTAAATCAAAATGAATTGGCATCACGTTTAACTTTAAACTGTTC
ACCTGTAAGTCTATTAAATCCATCAGGTGGTCTAATGGATAATATAACAATCATTGATTG
TTTAGATTCAACTATACCCGAGAAATTACGTGAAGAGGTTTATAAATATTATCCAAATGC
TAAAACTGCCCTCTTAAAAAGTGGTGGTGATTTCTCCTATCTTTCAAGATCTGATGAACT
TAATATTCATATTGAAGTTCATTTAAGAAGATTTGAAAATTTAAATAACAATAACAACAA
CAACAACAACAACAACAACAACAATAAGGATATTAAAAATAATAATGAAAAACAAGAAGT
TAAAATACATCAAATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATNATNATAATAATATAGATAAAAATAATGTAAATAAAATAGAAAATAATAATAA
TGATATCGATATTGAAGGACAAAATAGAATTTCAACAACCACAATTTCAAAGAATGTTAG
CGAGGCAACTGGAAAATTAAATACTAGCGTTTTTGATAATGAAGATAATGATGTATTTTT
ATAAATAATAATAATAATTAATAATAATAACAATTTTATTATTATTATTGGTAAATCCTA
AAAAAAAAAGAAATAATCAAATCATCAATAAAGTATTTTTATTNTAAAAAAAAAA
sequence update 1999. 2.25
Translated Amino Acid sequence
NNFPSGLLDNETREAVDFMVDQLETLNQNELASRLTLNCSPVSLLNPSGGLMDNITIIDC
LDSTIPEKLREEVYKYYPNAKTALLKSGGDFSYLSRSDELNIHIEVHLRRFENLNNNNNN
NNNNNNNNKDIKNNNEKQEVKIHQINNNNNNNNNNNNNNNNNXXNNIDKNNVNKIENNNN
DIDIEGQNRISTTTISKNVSEATGKLNTSVFDNEDNDVFL*iiiiinnnnnfiiiigks*
kkkk*snhq*sifixkkk


Translated Amino Acid sequence (All Frames)
Frame A:
k*fpirfir**nerscrfhg*signfksk*igitfnfklftcksiksirwsng*ynnh*l
frfnytreit*rgl*ilskc*ncplkkww*fllsfki**t*ysy*ssfkki*kfk*q*qq
qqqqqqqq*gy*k***ktrs*ntsnk****************xx**yr*k*ck*nrk***
*yry*rtk*nfnnhnfkec*rgnwkiky*rf***r**cifinnnnn****qfyyyyw*il
kkkeiikssikyfyxkkk


Frame B:
NNFPSGLLDNETREAVDFMVDQLETLNQNELASRLTLNCSPVSLLNPSGGLMDNITIIDC
LDSTIPEKLREEVYKYYPNAKTALLKSGGDFSYLSRSDELNIHIEVHLRRFENLNNNNNN
NNNNNNNNKDIKNNNEKQEVKIHQINNNNNNNNNNNNNNNNNXXNNIDKNNVNKIENNNN
DIDIEGQNRISTTTISKNVSEATGKLNTSVFDNEDNDVFL*iiiiinnnnnfiiiigks*
kkkk*snhq*sifixkkk


Frame C:
iishqvy*imkrekl*iswlinwkl*ikmnwhhv*l*tvhl*vy*ihqvv*wii*qsliv
*iqlyprnyvkrfiniiqmlklps*kvvvispifqdlmnlifilkfi*edlki*itittt
tttttttirilkiimknkklkyik*iiiiiiiiiiiiiiiixxiii*ikim*ik*kiiim
isilkdkiefqqpqfqrmlarqlen*ilaflimkimmyfyk****liiitilllllvnpk
kkrnnqiinkvflx*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA746 (SSA746Q) /CSM/SS/SSA7-B/SSA746Q.Seq.d/ 686 0.0
SSB809 (SSB809Q) /CSM/SS/SSB8-A/SSB809Q.Seq.d/ 40 0.049
VHP772 (VHP772Q) /CSM/VH/VHP7-C/VHP772Q.Seq.d/ 38 0.19
VHJ311 (VHJ311Q) /CSM/VH/VHJ3-A/VHJ311Q.Seq.d/ 38 0.19
VHI727 (VHI727Q) /CSM/VH/VHI7-B/VHI727Q.Seq.d/ 38 0.19
VHC742 (VHC742Q) /CSM/VH/VHC7-B/VHC742Q.Seq.d/ 38 0.19
VHC690 (VHC690Q) /CSM/VH/VHC6-D/VHC690Q.Seq.d/ 38 0.19
VHA413 (VHA413Q) /CSM/VH/VHA4-A/VHA413Q.Seq.d/ 38 0.19
SSD140 (SSD140Q) /CSM/SS/SSD1-B/SSD140Q.Seq.d/ 38 0.19
SSC317 (SSC317Q) /CSM/SS/SSC3-A/SSC317Q.Seq.d/ 38 0.19

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC114265|AC114265.2 Dictyostelium discoideum chromosome 2 map 4520461-4544940 strain AX4, complete sequence. 32 3e-05 8
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 36 2e-04 11
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 4e-04 8
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12 section 3 of 9 of the complete sequence. 40 4e-04 12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 6e-04 5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 9e-04 7
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 32 0.001 9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 0.001 7
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4. 36 0.001 7
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 36 0.002 6
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6PC62) RecName: Full=Maspardin; AltName: Full=Spastic parapleg... 110 7e-23
BT043641_1(BT043641|pid:none) Salmo salar clone HM5_0758 spastic... 108 2e-22
BC118867_1(BC118867|pid:none) Xenopus tropicalis spastic paraple... 107 3e-22
(Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Ma... 105 2e-21
(Q9NZD8) RecName: Full=Maspardin; AltName: Full=Spastic parapleg... 103 5e-21
AK149930_1(AK149930|pid:none) Mus musculus bone marrow macrophag... 103 5e-21
(Q9CQC8) RecName: Full=Maspardin; AltName: Full=Spastic parapleg... 103 5e-21
AK153284_1(AK153284|pid:none) Mus musculus bone marrow macrophag... 103 5e-21
(Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal recessive Ma... 103 5e-21
CR860085_1(CR860085|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1... 102 1e-20
protein update 2009. 7. 6
PSORT

psg: 0.75 gvh: 0.49 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
16.0 %: cytoskeletal
16.0 %: nuclear
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSA746 is cyt

5' end seq. ID SSA746F
5' end seq.
>SSA746F.Seq
AAATAATTTCCCATCAGGTTTATTAGATAATGAAACGAGAGAAGCTGTAGATTTCATGGT
TGATCAATTGGAAACTTTAAATCAAAATGAATTGGCATCACGTTTAACTTTAAACTGTTC
ACCTGTAAGTCTATTAAATCCATCAGGTGGTCTAATGGATAATATAACAATCATTGATTG
TTTAGATTCAACTATACCCGAGAAATTACGTGAAGAGGTTTATAAATATTATCCAAATGC
TAAAACTGCCCTCTTAAAAAGTGGTGGTGATTTCTCCTATCTTTCAAGATCTGATGAACT
TAATATTCATATTGAA----------
Length of 5' end seq. 316
3' end seq. ID SSA746Z
3' end seq.
>SSA746Z.Seq
----------TCTTTCAAGATCTGATGAACTTAATATTCATATTGAAGTTCATTTAAGAA
GATTTGAAAATTTAAATAACAATAACAACAACAACAACAACAACAACAACAACAATAAGG
ATATTAAAAATAATAATGAAAAACAAGAAGTTAAAATACATCAAATAAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATNATNATAATAATATAGATAAAA
ATAATGTAAATAAAATAGAAAATAATAATAATGATATCGATATTGAAGGACAAAATAGAA
TTTCAACAACCACAATTTCAAAGAATGTTAGCGAGGCAACTGGAAAATTAAATACTAGCG
TTTTTGATAATGAAGATAATGATGTATTTTTATAAATAATAATAATAATTAATAATAATA
ACAATTTTATTATTATTATTGGTAAATCCTAAAAAAAAAAGAAATAATCAAATCATCAAT
AAAGTATTTTTATTNTAAAAAAAAAA
Length of 3' end seq. 496
Connected seq. ID SSA746P
Connected seq.
>SSA746P.Seq
AAATAATTTCCCATCAGGTTTATTAGATAATGAAACGAGAGAAGCTGTAGATTTCATGGT
TGATCAATTGGAAACTTTAAATCAAAATGAATTGGCATCACGTTTAACTTTAAACTGTTC
ACCTGTAAGTCTATTAAATCCATCAGGTGGTCTAATGGATAATATAACAATCATTGATTG
TTTAGATTCAACTATACCCGAGAAATTACGTGAAGAGGTTTATAAATATTATCCAAATGC
TAAAACTGCCCTCTTAAAAAGTGGTGGTGATTTCTCCTATCTTTCAAGATCTGATGAACT
TAATATTCATATTGAA----------TCTTTCAAGATCTGATGAACTTAATATTCATATT
GAAGTTCATTTAAGAAGATTTGAAAATTTAAATAACAATAACAACAACAACAACAACAAC
AACAACAACAATAAGGATATTAAAAATAATAATGAAAAACAAGAAGTTAAAATACATCAA
ATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATNATNAT
AATAATATAGATAAAAATAATGTAAATAAAATAGAAAATAATAATAATGATATCGATATT
GAAGGACAAAATAGAATTTCAACAACCACAATTTCAAAGAATGTTAGCGAGGCAACTGGA
AAATTAAATACTAGCGTTTTTGATAATGAAGATAATGATGTATTTTTATAAATAATAATA
ATAATTAATAATAATAACAATTTTATTATTATTATTGGTAAATCCTAAAAAAAAAAGAAA
TAATCAAATCATCAATAAAGTATTTTTATTNTAAAAAAAAAA
Length of connected seq. 812
Full length Seq ID SSA746E
Full length Seq.
>SSA746E.Seq
AAATAATTTCCCATCAGGTTTATTAGATAATGAAACGAGAGAAGCTGTAGATTTCATGGT
TGATCAATTGGAAACTTTAAATCAAAATGAATTGGCATCACGTTTAACTTTAAACTGTTC
ACCTGTAAGTCTATTAAATCCATCAGGTGGTCTAATGGATAATATAACAATCATTGATTG
TTTAGATTCAACTATACCCGAGAAATTACGTGAAGAGGTTTATAAATATTATCCAAATGC
TAAAACTGCCCTCTTAAAAAGTGGTGGTGATTTCTCCTATCTTTCAAGATCTGATGAACT
TAATATTCATATTGAAGTTCATTTAAGAAGATTTGAAAATTTAAATAACAATAACAACAA
CAACAACAACAACAACAACAACAATAAGGATATTAAAAATAATAATGAAAAACAAGAAGT
TAAAATACATCAAATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATNATNATAATAATATAGATAAAAATAATGTAAATAAAATAGAAAATAATAATAA
TGATATCGATATTGAAGGACAAAATAGAATTTCAACAACCACAATTTCAAAGAATGTTAG
CGAGGCAACTGGAAAATTAAATACTAGCGTTTTTGATAATGAAGATAATGATGTATTTTT
ATAAATAATAATAATAATTAATAATAATAACAATTTTATTATTATTATTGGTAAATCCTA
AAAAAAAAAGAAATAATCAAATCATCAATAAAGTATTTTTATTNTAAAAAAAAAA
Length of full length seq. 775