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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA728
Library SS
(Link to library)
Clone ID SSA728
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14313-1
Original site URL
Representative seq. ID SSA728P
(Link to Original site)
Representative DNA sequence 
>SSA728 (SSA728Q) /CSM/SS/SSA7-B/SSA728Q.Seq.d/
ATGATGTCGAGCGCCAACATATAGAATCGGTAAAACAAGTCAAACAACATTTTCAAAAAT
TAATTGAATCGATTCAGTCCATTGAAAAGGATATCATTGAAAAATTACAATCAACAGTTG
AATGGAATAAAGAATTACAAAATTCAATTAAACAGCAGTTTGAAAGAGATTCAAAGAAAA
TCGATTCGATAATTTCAAAACATCATTCGAAAATCAATGGTTATCAAATTGACCAAATTT
ACGATTTTGAAACTAAACAACATATTGAAATTATTAAAGATTCAGATCAATGTACACCAC
TATTAAAAAGAAGATTXXXXXXXXXXATATAGTAGTTTTAATCATCCAATTATTCCTCAA
AAATATTTCAGAATCTGTTGAAACTTTAGTATTATTTAATATTAAATTAAATCTTGAAAA
TAAAGTAATACCAAAATCAATTAAAGAATTACATTTATGTGATGGATTTGAACAACAAAT
TCAACCATTCTCAATTGAAAATGGTGGAAAATTAGAGAAATTGGTATTATGTGATATTAA
AGAAAAACTATTAAAAAATTCAATACCAAATTCTGTTAAAAAATTAATTTTCTTAGGTTA
TAATCATCAATTAGAAAATGGTATTTTAAATGATTCTTTAGAATTAATTTATTTTAGTAA
AAGTTTTACTCATCCAATTGATAATAATTTAATTCCAAATAATATTGAAATTATAAAAAA
ATAAAAAAATTTAAATAAAACAAAAAATAAATAAATAAATAAATAAACTTTTGACCTATT
TAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
DVERQHIESVKQVKQHFQKLIESIQSIEKDIIEKLQSTVEWNKELQNSIKQQFERDSKKI
DSIISKHHSKINGYQIDQIYDFETKQHIEIIKDSDQCTPLLKRR---

---IVVLIIQLFLKNISESVETLVLFNIKLNLENKVIPKSIKELHLCDGFEQQIQPFSIE
NGGKLEKLVLCDIKEKLLKNSIPNSVKKLIFLGYNHQLENGILNDSLELIYFSKSFTHPI
DNNLIPNNIEIIKK*knlnktknk*ink*tfdlfkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
mmssani*nr*nksnnifkn*lnrfsplkrislknynqqlngiknykiqlnsslkeiqrk
sir*fqniirksmvikltkftilklnnilkllkiqinvhhy*ked---

---i**f*ssnysskifqnllkl*yyliln*ilkik*yqnqlknyiyvmdlnnkfnhsql
kmven*rnwyyvilkkny*kiqyqillkn*fs*viiin*kmvf*mil*n*filvkvlliq
liii*fqiilkl*knkki*ikqkink*inklltylkkkkkk

Frame B:
*craptyrigktsqttfskin*idsvh*kgyh*kitins*me*ritkfn*tav*krfken
rfdnfktsfenqwlsn*pnlrf*n*tty*ny*rfrsmyttikkki---

---yssfnhpiipqkyfric*nfsii*y*iks*k*sntkin*ritfm*wi*ttnstiln*
kwwkireigim*y*rktikkfntkfc*kinflrl*ssirkwyfk*ffrinlf**kfyssn
***fnsk*y*nykkikkfk*nkk*ink*inf*pi*kkkkk

Frame C:
DVERQHIESVKQVKQHFQKLIESIQSIEKDIIEKLQSTVEWNKELQNSIKQQFERDSKKI
DSIISKHHSKINGYQIDQIYDFETKQHIEIIKDSDQCTPLLKRR---

---IVVLIIQLFLKNISESVETLVLFNIKLNLENKVIPKSIKELHLCDGFEQQIQPFSIE
NGGKLEKLVLCDIKEKLLKNSIPNSVKKLIFLGYNHQLENGILNDSLELIYFSKSFTHPI
DNNLIPNNIEIIKK*knlnktknk*ink*tfdlfkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA728 (SSA728Q) /CSM/SS/SSA7-B/SSA728Q.Seq.d/                       1342   0.0
SSL543 (SSL543Q) /CSM/SS/SSL5-B/SSL543Q.Seq.d/                        739   0.0
SSC691 (SSC691Q) /CSM/SS/SSC6-D/SSC691Q.Seq.d/                        739   0.0
SSF164 (SSF164Q) /CSM/SS/SSF1-C/SSF164Q.Seq.d/                        718   0.0
SSA649 (SSA649Q) /CSM/SS/SSA6-C/SSA649Q.Seq.d/                        414   e-115
CHG341 (CHG341Q) /CSM/CH/CHG3-B/CHG341Q.Seq.d/                        361   1e-98
SSA519 (SSA519Q) /CSM/SS/SSA5-A/SSA519Q.Seq.d/                        180   2e-44
SSK639 (SSK639Q) /CSM/SS/SSK6-B/SSK639Q.Seq.d/                         46   8e-04
VFH417 (VFH417Q) /CSM/VF/VFH4-A/VFH417Q.Seq.d/                         42   0.013
SSK389 (SSK389Q) /CSM/SS/SSK3-D/SSK389Q.Seq.d/                         42   0.013
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   690  0.0  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  1e-08  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36  1e-05  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32  2e-05  13
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36  3e-05  10
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    46  2e-04  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36  4e-04  15
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    34  0.001  11
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42  0.002  9
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40  0.003  6
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...   215   1e-56
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    66   1e-09
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    63   1e-08
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    58   4e-07
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    58   4e-07
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            57   5e-07
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    57   5e-07
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    57   9e-07
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    53   1e-05
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...    53   1e-05
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.22  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSA728 is nuc
5' end seq. ID SSA728F
5' end seq. 
>SSA728F.Seq
ATGATGTCGAGCGCCAACATATAGAATCGGTAAAACAAGTCAAACAACATTTTCAAAAAT
TAATTGAATCGATTCAGTCCATTGAAAAGGATATCATTGAAAAATTACAATCAACAGTTG
AATGGAATAAAGAATTACAAAATTCAATTAAACAGCAGTTTGAAAGAGATTCAAAGAAAA
TCGATTCGATAATTTCAAAACATCATTCGAAAATCAATGGTTATCAAATTGACCAAATTT
ACGATTTTGAAACTAAACAACATATTGAAATTATTAAAGATTCAGATCAATGTACACCAC
TATTAAAAAGAAGATT----------
Length of 5' end seq. 316
3' end seq. ID SSA728Z
3' end seq. 
>SSA728Z.Seq
----------ATATAGTAGTTTTAATCATCCAATTATTCCTCAAAAATATTTCAGAATCT
GTTGAAACTTTAGTATTATTTAATATTAAATTAAATCTTGAAAATAAAGTAATACCAAAA
TCAATTAAAGAATTACATTTATGTGATGGATTTGAACAACAAATTCAACCATTCTCAATT
GAAAATGGTGGAAAATTAGAGAAATTGGTATTATGTGATATTAAAGAAAAACTATTAAAA
AATTCAATACCAAATTCTGTTAAAAAATTAATTTTCTTAGGTTATAATCATCAATTAGAA
AATGGTATTTTAAATGATTCTTTAGAATTAATTTATTTTAGTAAAAGTTTTACTCATCCA
ATTGATAATAATTTAATTCCAAATAATATTGAAATTATAAAAAAATAAAAAAATTTAAAT
AAAACAAAAAATAAATAAATAAATAAATAAACTTTTGACCTATTTAAAAAAAAAAAAAAA
AAAA
Length of 3' end seq. 474
Connected seq. ID SSA728P
Connected seq. 
>SSA728P.Seq
ATGATGTCGAGCGCCAACATATAGAATCGGTAAAACAAGTCAAACAACATTTTCAAAAAT
TAATTGAATCGATTCAGTCCATTGAAAAGGATATCATTGAAAAATTACAATCAACAGTTG
AATGGAATAAAGAATTACAAAATTCAATTAAACAGCAGTTTGAAAGAGATTCAAAGAAAA
TCGATTCGATAATTTCAAAACATCATTCGAAAATCAATGGTTATCAAATTGACCAAATTT
ACGATTTTGAAACTAAACAACATATTGAAATTATTAAAGATTCAGATCAATGTACACCAC
TATTAAAAAGAAGATT----------ATATAGTAGTTTTAATCATCCAATTATTCCTCAA
AAATATTTCAGAATCTGTTGAAACTTTAGTATTATTTAATATTAAATTAAATCTTGAAAA
TAAAGTAATACCAAAATCAATTAAAGAATTACATTTATGTGATGGATTTGAACAACAAAT
TCAACCATTCTCAATTGAAAATGGTGGAAAATTAGAGAAATTGGTATTATGTGATATTAA
AGAAAAACTATTAAAAAATTCAATACCAAATTCTGTTAAAAAATTAATTTTCTTAGGTTA
TAATCATCAATTAGAAAATGGTATTTTAAATGATTCTTTAGAATTAATTTATTTTAGTAA
AAGTTTTACTCATCCAATTGATAATAATTTAATTCCAAATAATATTGAAATTATAAAAAA
ATAAAAAAATTTAAATAAAACAAAAAATAAATAAATAAATAAATAAACTTTTGACCTATT
TAAAAAAAAAAAAAAAAAAA
Length of connected seq. 790
Full length Seq ID -
Full length Seq. -
Length of full length seq. -