SSA726
Library SS
(Link to library)
Clone ID SSA726
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04457-1
Original site URL
Representative seq. ID SSA726F
(Link to Original site)
Representative DNA sequence
>SSA726 (SSA726Q) /CSM/SS/SSA7-B/SSA726Q.Seq.d/
TTTTTTTTGGGGTGGAGTGTAAAAAAAAAAAAAAATTTTAATTATTTAGTTAAGTTTTTT
TTTTTTTTGTCCTTTGCTTCTGTTGTTTTTTTTTTTTCACCCTTTTTTCTTTTTTTTTTT
TTTTTCCCAACTTTTGATTTTAAATATCGGAACCAAATGTATTTTCACCGCTATAGCAAA
TATATAAAAAGCCATCTTCATCTTTATGAGCGTCATATATTGAGGATXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence
FFLGWSVKKKKNFNYLVKFFFFLSFASVVFFFSPFFLFFFFFPTFDFKYRNQMYFHRYSK
YIKSHLHLYERHILR---


Translated Amino Acid sequence (All Frames)
Frame A:
FFLGWSVKKKKNFNYLVKFFFFLSFASVVFFFSPFFLFFFFFPTFDFKYRNQMYFHRYSK
YIKSHLHLYERHILR---


Frame B:
ffwggv*kkkkilii*lsffffcpllllffffhpfffffffsqllilnigtkciftaian
i*kaififmsviy*g---


Frame C:
ffgveckkkkkf*lfs*vffffvlcfccfffftlfsfffffpnf*f*isepnvfspl*qi
ykkpsssl*asyie---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA726 (SSA726Q) /CSM/SS/SSA7-B/SSA726Q.Seq.d/ 202 2e-51
VSE791 (VSE791Q) /CSM/VS/VSE7-D/VSE791Q.Seq.d/ 40 0.014
SSM844 (SSM844Q) /CSM/SS/SSM8-B/SSM844Q.Seq.d/ 40 0.014
SSC775 (SSC775Q) /CSM/SS/SSC7-D/SSC775Q.Seq.d/ 40 0.014
SLB339 (SLB339Q) /CSM/SL/SLB3-B/SLB339Q.Seq.d/ 40 0.014
SLE554 (SLE554Q) /CSM/SL/SLE5-C/SLE554Q.Seq.d/ 38 0.057
AHK794 (AHK794Q) /CSM/AH/AHK7-D/AHK794Q.Seq.d/ 34 0.88
VSK385 (VSK385Q) /CSM/VS/VSK3-D/VSK385Q.Seq.d/ 32 3.5
VSI645 (VSI645Q) /CSM/VS/VSI6-B/VSI645Q.Seq.d/ 32 3.5
VSE816 (VSE816Q) /CSM/VS/VSE8-A/VSE816Q.Seq.d/ 32 3.5

own update 2004. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB090596|CB090596.1 gy77e12.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone gy77e12, mRNA sequence. 48 3e-04 2
CB091944|CB091944.1 he98d04.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone he98d04, mRNA sequence. 48 3e-04 2
AC110464|AC110464.4 Rattus norvegicus clone CH230-287M15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 50 0.061 2
BI209252|BI209252.1 EST527292 cTOS Lycopersicon esculentum cDNA clone cTOS19L1 5' end, mRNA sequence. 46 0.18 1
AW224715|AW224715.1 EST303158 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY6G23, mRNA sequence. 46 0.18 1
AW224716|AW224716.1 EST303159 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY6G23 similar to Laccaria bicolor symbiosis-related protein, mRNA sequence. 46 0.18 1
AW224714|AW224714.1 EST303157 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY6G23 similar to Laccaria bicolor symbiosis-related protein, mRNA sequence. 46 0.18 1
CB085924|CB085924.1 hg18e08.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hg18e08, mRNA sequence. 40 0.92 2
AY191015|AY191015.1 Dictyostelium discoideum autophagy protein 8 (apg8) gene, complete cds. 34 2.8 2
Z68298|Z68298.1 Caenorhabditis elegans cosmid F44D12. 38 7.3 2
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86CR8) RecName: Full=Autophagy-related protein 8; AltName: Ful... 52 6e-06
(Q2GVL1) RecName: Full=Autophagy-related protein 8; AltName: Ful... 52 8e-06
(Q8J282) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(A6RPU4) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(Q5B2U9) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(A7KAL9) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(A1CQS1) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(Q51MW4) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
(Q8WZY7) RecName: Full=Autophagy-related protein 8; AltName: Ful... 51 1e-05
EU430269_1(EU430269|pid:none) Gibberella zeae strain ZF2021 micr... 51 1e-05
protein update 2009. 6. 8
PSORT

psg: 0.69 gvh: 0.57 alm: 0.25 top: 0.43 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: mitochondrial
12.0 %: nuclear
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSA726 is end

5' end seq. ID SSA726F
5' end seq.
>SSA726F.Seq
TTTTTTTTGGGGTGGAGTGTAAAAAAAAAAAAAAATTTTAATTATTTAGTTAAGTTTTTT
TTTTTTTTGTCCTTTGCTTCTGTTGTTTTTTTTTTTTCACCCTTTTTTCTTTTTTTTTTT
TTTTTCCCAACTTTTGATTTTAAATATCGGAACCAAATGTATTTTCACCGCTATAGCAAA
TATATAAAAAGCCATCTTCATCTTTATGAGCGTCATATATTGAGGAT----------
Length of 5' end seq. 227
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -