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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA716
Library SS
(Link to library)
Clone ID SSA716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11768-1
Original site URL
Representative seq. ID SSA716P
(Link to Original site)
Representative DNA sequence 
>SSA716 (SSA716Q) /CSM/SS/SSA7-A/SSA716Q.Seq.d/
AGCCGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAGAGATGA
TATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACGTAACAC
TGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGACCCAAT
TCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATTGCCAGA
GATGGATCATGTCCAATXXXXXXXXXXGGTTCAAAAGATCATCGAAGATGAAGTTAAAGA
TCTTTTAGATAAACAATATCAATACTCTAAAGAATTAATCATTAAAAATAGAGATAACAT
GGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTTAACTGGTGAAGAAATTTTAAA
GATTTTAAATCCCAAAGTAACTTTACCAATTCAAAATAATAATAATAATAATAATATTTC
TGTTCCATCTTCACCATTTTCATCATCTGGAAATTCATTATTACCATNACCTGTACCATC
ATTTTTTTCACCAATTGCAATTAGTCTTTAAAAAAAAAAAAAAAAAAATTTTTAAAAACA
TATATATATAATAAATAAATCGACGGATTTTTTTTTTTTTTTATAGTAAAAAAAAAAAAA
AAAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
AVQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAADPI
HKATIVQRGQALGMVSQLPEMDHVQ---

---VQKIIEDEVKDLLDKQYQYSKELIIKNRDNMEKLVGQLLEKETLTGEEILKILNPKV
TLPIQNNNNNNNISVPSSPFSSSGNSLLPXPVPSFFSPIAISL*kkkkknf*khiyiink
stdffffl**kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
srskw*rnh*yqtnr*ckr*yfngscsfeccne*rskt*hcls*swscfgssnd*srrpn
s*shyrskrssfrygftiardgscp---

---gskdhrr*s*rsfr*tisil*rinh*k*r*hgeisrpiigernfnw*rnfkdfksqs
nftnsk******yfcsiftifiiwkfiitxtctiifftncn*slkkkkkkflktyiynk*
idgfffffivkkkkkkkk

Frame B:
AVQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAADPI
HKATIVQRGQALGMVSQLPEMDHVQ---

---VQKIIEDEVKDLLDKQYQYSKELIIKNRDNMEKLVGQLLEKETLTGEEILKILNPKV
TLPIQNNNNNNNISVPSSPFSSSGNSLLPXPVPSFFSPIAISL*kkkkknf*khiyiink
stdffffl**kkkkkkk

Frame C:
pfkmvkkplvsnksmmqemif*wvvlv*ml**vkkqdvtlpimklvmlw*qq*lkpptqf
ikplsfkevkl*vwfhncqrwimsn---

---fkrsskmklkif*innintlkn*slkieitwrn*sanywrkkl*lvkkf*rf*ipk*
lyqfkiiiiiiiflfhlhhfhhleihyyhxlyhhffhqlqlvfkkkkkkifkniyi**in
rriffffyskkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA716 (SSA716Q) /CSM/SS/SSA7-A/SSA716Q.Seq.d/                        841   0.0
VHN314 (VHN314Q) /CSM/VH/VHN3-A/VHN314Q.Seq.d/                        509   e-143
CHR162 (CHR162Q) /CSM/CH/CHR1-C/CHR162Q.Seq.d/                        504   e-141
CHI518 (CHI518Q) /CSM/CH/CHI5-A/CHI518Q.Seq.d/                        502   e-141
AFN304 (AFN304Q) /CSM/AF/AFN3-A/AFN304Q.Seq.d/                        502   e-141
CHH639 (CHH639Q) /CSM/CH/CHH6-B/CHH639Q.Seq.d/                        448   e-125
VSA860 (VSA860Q) /CSM/VS/VSA8-C/VSA860Q.Seq.d/                        363   2e-99
CHO268 (CHO268Q) /CSM/CH/CHO2-C/CHO268Q.Seq.d/                        345   5e-94
SSI556 (SSI556Q) /CSM/SS/SSI5-C/SSI556Q.Seq.d/                        343   2e-93
SFE349 (SFE349Q) /CSM/SF/SFE3-C/SFE349Q.Seq.d/                         46   7e-04
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC136131|AC136131.2 Rattus norvegicus clone CH230-270C21, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.011  2
AE001419|AE001419.2 Plasmodium falciparum 3D7 chromosome 2 section 56 of 73 of the complete sequence.    40  0.015  4
AC020690|AC020690.4 Homo sapiens chromosome 4 clone RP11-489J24 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46  0.020  4
AC019163|AC019163.8 Homo sapiens chromosome 4 clone RP11-87F15, complete sequence.    46  0.022  4
AC097958|AC097958.5 Rattus norvegicus clone CH230-113I22, WORKING DRAFT SEQUENCE, 1 ordered piece.    50  0.035  1
AC141792|AC141792.1 Apis mellifera clone CH224-60D5, WORKING DRAFT SEQUENCE, 15 unordered pieces.    50  0.035  1
AA996817|AA996817.1 UI-R-C0-hg-a-03-0-UI.s1 UI-R-C0 Rattus norvegicus cDNA clone UI-R-C0-hg-a-03-0-UI 3', mRNA sequence.    50  0.035  1
AC116377|AC116377.3 Homo sapiens chromosome 8 clone RP11-781C3 map 8, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    50  0.035  1
AP005626|AP005626.2 Homo sapiens genomic DNA, chromosome 8q24, clone: KB51H10, complete sequence.    50  0.035  1
AE001411|AE001411.2 Plasmodium falciparum 3D7 chromosome 2 section 48 of 73 of the complete sequence.    40  0.036  2
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC133572_5(AC133572|pid:none) Medicago truncatula clone mth2-10o...   100   4e-20
AJ635223_1(AJ635223|pid:none) Pisum sativum mRNA for ftsH-like p...   100   4e-20
CP000596_9(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 c...    99   1e-19
CP001010_725(CP001010|pid:none) Polynucleobacter necessarius sub...    97   3e-19
CR954217_1(CR954217|pid:none) Ostreococcus tauri strain OTTH0595...    97   3e-19
CP000774_2117(CP000774|pid:none) Parvibaculum lavamentivorans DS...    97   4e-19
(Q8LQJ9) RecName: Full=Cell division protease ftsH homolog 4, mi...    97   6e-19
CP000236_1047(CP000236|pid:none) Ehrlichia chaffeensis str. Arka...    96   7e-19
DQ308538_1(DQ308538|pid:none) Triticum monococcum cultivar DV92 ...    96   9e-19
(Q8LQJ8) RecName: Full=Cell division protease ftsH homolog 5, mi...    96   9e-19
protein update 2009. 6. 8
PSORT 

 psg: 0.64  gvh: 0.47  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA716 is nuc
5' end seq. ID SSA716F
5' end seq. 
>SSA716F.Seq
AGCCGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAGAGATGA
TATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACGTAACAC
TGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGACCCAAT
TCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATTGCCAGA
GATGGATCATGTCCAAT----------
Length of 5' end seq. 257
3' end seq. ID SSA716Z
3' end seq. 
>SSA716Z.Seq
----------GGTTCAAAAGATCATCGAAGATGAAGTTAAAGATCTTTTAGATAAACAAT
ATCAATACTCTAAAGAATTAATCATTAAAAATAGAGATAACATGGAGAAATTAGTCGGCC
AATTATTGGAGAAAGAAACTTTAACTGGTGAAGAAATTTTAAAGATTTTAAATCCCAAAG
TAACTTTACCAATTCAAAATAATAATAATAATAATAATATTTCTGTTCCATCTTCACCAT
TTTCATCATCTGGAAATTCATTATTACCATNACCTGTACCATCATTTTTTTCACCAATTG
CAATTAGTCTTTAAAAAAAAAAAAAAAAAAATTTTTAAAAACATATATATATAATAAATA
AATCGACGGATTTTTTTTTTTTTTTATAGTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 405
Connected seq. ID SSA716P
Connected seq. 
>SSA716P.Seq
AGCCGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAGAGATGA
TATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACGTAACAC
TGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGACCCAAT
TCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATTGCCAGA
GATGGATCATGTCCAAT----------GGTTCAAAAGATCATCGAAGATGAAGTTAAAGA
TCTTTTAGATAAACAATATCAATACTCTAAAGAATTAATCATTAAAAATAGAGATAACAT
GGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTTAACTGGTGAAGAAATTTTAAA
GATTTTAAATCCCAAAGTAACTTTACCAATTCAAAATAATAATAATAATAATAATATTTC
TGTTCCATCTTCACCATTTTCATCATCTGGAAATTCATTATTACCATNACCTGTACCATC
ATTTTTTTCACCAATTGCAATTAGTCTTTAAAAAAAAAAAAAAAAAAATTTTTAAAAACA
TATATATATAATAAATAAATCGACGGATTTTTTTTTTTTTTTATAGTAAAAAAAAAAAAA
AAAAAAAAAAAA
Length of connected seq. 662
Full length Seq ID -
Full length Seq. -
Length of full length seq. -