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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA715
Library SS
(Link to library)
Clone ID SSA715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03802-1
Original site URL
Representative seq. ID SSA715F
(Link to Original site)
Representative DNA sequence 
>SSA715 (SSA715Q) /CSM/SS/SSA7-A/SSA715Q.Seq.d/
ACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCAAAA
AAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTCTTC
CAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGACTC
TTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATAAAT
TATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGAXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
NSQKIIYNKMLPRSLKLIKKVGESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMTL
HHKKHHQTYVNNLNIALDKLSSASSAKDVAQM---
Translated Amino Acid sequence (All Frames) 
Frame A:
tipkk*yiikcylvhsn*skklenqmd*eilghnqihilfqiyhmimvlfhqssvqkl*l
fiirniiklm*iilisl*inyllllqqkmllk---


Frame B:
qfpknni**nvtsftqinqkswrikwikkfwvtikfiyssrfti*lwcsftshqsrnyds
ss*etssnlck*s*yrfr*iifcffskrccsn---


Frame C:
NSQKIIYNKMLPRSLKLIKKVGESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMTL
HHKKHHQTYVNNLNIALDKLSSASSAKDVAQM---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH246 (VSH246Q) /CSM/VS/VSH2-B/VSH246Q.Seq.d/                        553   e-157
SSA715 (SSA715Q) /CSM/SS/SSA7-A/SSA715Q.Seq.d/                        553   e-157
SSA566 (SSA566Q) /CSM/SS/SSA5-C/SSA566Q.Seq.d/                        553   e-157
VSF871 (VSF871Q) /CSM/VS/VSF8-C/VSF871Q.Seq.d/                        547   e-155
SLA587 (SLA587Q) /CSM/SL/SLA5-D/SLA587Q.Seq.d/                        408   e-113
SSM325 (SSM325Q) /CSM/SS/SSM3-B/SSM325Q.Seq.d/                        369   e-101
VSE536 (VSE536Q) /CSM/VS/VSE5-B/VSE536Q.Seq.d/                        299   1e-80
SSE504 (SSE504Q) /CSM/SS/SSE5-A/SSE504Q.Seq.d/                        176   1e-43
VSE837 (VSE837Q) /CSM/VS/VSE8-B/VSE837Q.Seq.d/                        113   1e-24
SLJ264 (SLJ264Q) /CSM/SL/SLJ2-C/SLJ264Q.Seq.d/                         40   0.018
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z49248|Z49248.1 L.lactis subsp. lactis partial sod gene for superoxide dismutase.    58  6e-05  1
AE006277|AE006277.1 Lactococcus lactis subsp. lactis IL1403 section 39 of 218 of the complete genome.    58  6e-05  1
U17388|U17388.1 Lactococcus lactis superoxide dismutase (sodA) gene, complete cds; and unknown genes.    58  6e-05  1
AL897671|AL897671.1 Xenopus tropicalis EST, clone TEgg102o13 5'.    50  0.015  1
AL877628|AL877628.1 Xenopus tropicalis EST, clone TEgg127g02 5'.    50  0.015  1
AL890837|AL890837.1 Xenopus tropicalis EST, clone TEgg094o21 5'.    50  0.015  1
AL777023|AL777023.1 Xenopus tropicalis EST, clone TGas081g11 5'.    50  0.015  1
AL872585|AL872585.1 Xenopus tropicalis EST, clone TEgg109e18 5'.    50  0.015  1
AL440909|AL440909.1 T7 end of clone BD0AA015F01 of library BD0AA from strain CBS 94 of  Candida tropicalis.    50  0.015  1
AC005621|AC005621.1 Homo sapiens chromosome 19, cosmid F19678, complete sequence.    48  0.077  2
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O96347) RecName: Full=Superoxide dismutase [Mn], mitochondrial;...    75   7e-13
AF264029_1(AF264029|pid:none) Callinectes sapidus mitochondrial ...    75   7e-13
FJ605170_1(FJ605170|pid:none) Scylla serrata mitochondrial manga...    74   2e-12
DQ157765_1(DQ157765|pid:none) Macrobrachium rosenbergii mitochon...    74   2e-12
EU077525_1(EU077525|pid:none) Macrobrachium rosenbergii mitochon...    74   2e-12
AY675508_1(AY675508|pid:none) Paragonimus westermani Mn-SOD mRNA...    73   3e-12
BC073330_1(BC073330|pid:none) Xenopus laevis MGC80739 protein, m...    72   6e-12
BC075257_1(BC075257|pid:none) Xenopus tropicalis superoxide dism...    72   6e-12
AY362041_1(AY362041|pid:none) Xenopus laevis manganese superoxid...    72   6e-12
AB190802_1(AB190802|pid:none) Bombyx mori Mn sod mRNA for Mn sup...    72   6e-12
protein update 2009. 6. 8
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSA715 is mit
5' end seq. ID SSA715F
5' end seq. 
>SSA715F.Seq
ACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCAAAA
AAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTCTTC
CAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGACTC
TTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATAAAT
TATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGA----------
Length of 5' end seq. 279
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -