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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA706
Library SS
(Link to library)
Clone ID SSA706
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04454-1
Original site URL
Representative seq. ID SSA706F
(Link to Original site)
Representative DNA sequence 
>SSA706 (SSA706Q) /CSM/SS/SSA7-A/SSA706Q.Seq.d/
CTGCTGATGTAGATTTTAATTGGTTGGAAGATTCTGTACATGATAGTTTAATTGATGATG
ATGTTTTGGATTTCGATGAAAATAATAATAGTACTTATATACCAAGAAATAATAATAATA
ATAATAATAATAATAATATAATTAAAGAACAACAAGAACAACAAGAAGGTGAACAACAAG
AAGAACGACAACAAGAACAAATTTTAGATGAAGATGATGAATTAATGTTTTAATAATAAT
ATATTAAAATTTTAATTATTATCTGTCTTTTTTATTCTCAAAATTATAATAATCCAAATA
ATAATAATAATAATAAAAATAATATTACAATGTACATATATCTATXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
ADVDFNWLEDSVHDSLIDDDVLDFDENNNSTYIPRNNNNNNNNNNIIKEQQEQQEGEQQE
ERQQEQILDEDDELMF***yikiliiiclfysqnynnpnnnnnnknnitmyiyl---
Translated Amino Acid sequence (All Frames) 
Frame A:
llm*iligwkilymiv*lmmmfwismkiiivliyqeiiiiiiiiii*lknnknnkkvnnk
kndnknkf*mkmmn*cfnnnilkf*llsvffilkiiiiqiiiiiikiilqctyi---


Frame B:
c*crf*lvgrfct**fn***cfgfr*k***ylytkk*********yn*rttrttrr*ttr
rtttrtnfr*r**invliiiy*nfnyylsflfskl**sk******k*yynvhis---


Frame C:
ADVDFNWLEDSVHDSLIDDDVLDFDENNNSTYIPRNNNNNNNNNNIIKEQQEQQEGEQQE
ERQQEQILDEDDELMF***yikiliiiclfysqnynnpnnnnnnknnitmyiyl---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA706 (SSA706Q) /CSM/SS/SSA7-A/SSA706Q.Seq.d/                        155   5e-37
VSE790 (VSE790Q) /CSM/VS/VSE7-D/VSE790Q.Seq.d/                         40   0.022
VFJ740 (VFJ740Q) /CSM/VF/VFJ7-B/VFJ740Q.Seq.d/                         38   0.087
VHL419 (VHL419Q) /CSM/VH/VHL4-A/VHL419Q.Seq.d/                         36   0.34
VHJ279 (VHJ279Q) /CSM/VH/VHJ2-D/VHJ279Q.Seq.d/                         36   0.34
VHH101 (VHH101Q) /CSM/VH/VHH1-A/VHH101Q.Seq.d/                         36   0.34
VHF723 (VHF723Q) /CSM/VH/VHF7-A/VHF723Q.Seq.d/                         36   0.34
VHF677 (VHF677Q) /CSM/VH/VHF6-D/VHF677Q.Seq.d/                         36   0.34
CHM751 (CHM751Q) /CSM/CH/CHM7-C/CHM751Q.Seq.d/                         36   0.34
VSJ225 (VSJ225Q) /CSM/VS/VSJ2-B/VSJ225Q.Seq.d/                         34   1.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL772220|AL772220.7 Mouse DNA sequence from clone RP23-409N18 on chromosome 4.    44  1.1  1
AC110917|AC110917.9 Mus musculus clone RP23-155I20, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    44  1.1  1
AZ709218|AZ709218.1 RPCI-24-85I15.TVB RPCI-24 Mus musculus genomic clone RPCI-24-85I15, DNA sequence.    44  1.1  1
AC122260|AC122260.3 Mus musculus chromosome 6 clone RP23-185M15, complete sequence.    42  1.8  2
AZ616495|AZ616495.1 1M0446P15F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0446P15 F, DNA sequence.    38  1.8  2
AL929075|AL929075.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-132B9.    42  4.4  1
CA993545|CA993545.1 pAR08E02 pAR Gossypium hirsutum cDNA 5', mRNA sequence.    42  4.4  1
BV006652|BV006652.1 ORS 380 Sunflower strain HA370 genomic DNA Helianthus annuus STS genomic, sequence tagged site.    38  4.5  2
AW291981|AW291981.1 UI-H-BI2-agt-d-11-0-UI.s1 NCI_CGAP_Sub4 Homo sapiens cDNA clone IMAGE:2725317 3', mRNA sequence.    32  4.6  2
BV057049|BV057049.1 S208P6796RA4.T0 129S1/SvImJ Mus musculus STS genomic, sequence tagged site.    38  6.1  2
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VQ0) RecName: Full=Uncharacterized protein DDB_G0280205;           40   0.032
protein update 2009. 1.26
PSORT 

 psg: 0.75  gvh: 0.22  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA706 is nuc
5' end seq. ID SSA706F
5' end seq. 
>SSA706F.Seq
CTGCTGATGTAGATTTTAATTGGTTGGAAGATTCTGTACATGATAGTTTAATTGATGATG
ATGTTTTGGATTTCGATGAAAATAATAATAGTACTTATATACCAAGAAATAATAATAATA
ATAATAATAATAATAATATAATTAAAGAACAACAAGAACAACAAGAAGGTGAACAACAAG
AAGAACGACAACAAGAACAAATTTTAGATGAAGATGATGAATTAATGTTTTAATAATAAT
ATATTAAAATTTTAATTATTATCTGTCTTTTTTATTCTCAAAATTATAATAATCCAAATA
ATAATAATAATAATAAAAATAATATTACAATGTACATATATCTAT----------
Length of 5' end seq. 345
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -