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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA705
Library SS
(Link to library)
Clone ID SSA705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03274-1
Original site URL
Representative seq. ID SSA705P
(Link to Original site)
Representative DNA sequence 
>SSA705 (SSA705Q) /CSM/SS/SSA7-A/SSA705Q.Seq.d/
CAATTAGTTTAAGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATT
TGGATATTTGTAGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATG
GTGAATCAATATTTGTAGGACAAACTGAAAAAATTAAXXXXXXXXXXACAAGTCATTGTT
TCCAATTGGGTTCAAAAAAAGAAGTACGTGGTGTTGAGGGTGTTTTATTAACTTATGGTG
AAGTTATACCATCAATGTCATTATCTTATCCAACCAATTTCAAAGATATCATTTCTTACG
CTGCAAAGAAATCATTGGATGGTGTTACTTCAAAATCTCAAAAATATACTATACTCTTAA
TTTTAACCGATGGTGAAATCTCTGATATGAATGAAACAGTTCATGAAATTGTTAAGGCTT
CAAAACAATCACCTCTCTCTATAGTTATCATTGGTATTGGTGAAGCTACATTCGATAATA
TGAATAGATTGGATGGTGATGATGGTAATTCTTTAACTGATTCTTCAGGTCAAACTGCAA
CTCGTGATATCGTTCAATTCGTACCATTCAATAATTTCTCTGCAAATCCTGAAGCTTTAG
CCACTGAAACACTTCGTGAAATACCTCAACAATTACTTGGTTTTATGAACCAAAATAATT
ATTTACCAATGAGTCATAGATTAAAATAAAATAAATTTGTAGTTTAAAATA
sequence update 1999. 1.18
Translated Amino Acid sequence 
ISLSKPRVELRFKCSHLKNLDICSKSDPLIMVFDKRGEHGESIFVGQTEKI---

---TSHCFQLGSKKEVRGVEGVLLTYGEVIPSMSLSYPTNFKDIISYAAKKSLDGVTSKS
QKYTILLILTDGEISDMNETVHEIVKASKQSPLSIVIIGIGEATFDNMNRLDGDDGNSLT
DSSGQTATRDIVQFVPFNNFSANPEALATETLREIPQQLLGFMNQNNYLPMSHRLK*nkf
vv*n
Translated Amino Acid sequence (All Frames) 
Frame A:
qlv*vnpe*n*dlnvhi*riwifvvnqih*lwfltkevnmvnqyl*dklkkl---

---TSHCFQLGSKKEVRGVEGVLLTYGEVIPSMSLSYPTNFKDIISYAAKKSLDGVTSKS
QKYTILLILTDGEISDMNETVHEIVKASKQSPLSIVIIGIGEATFDNMNRLDGDDGNSLT
DSSGQTATRDIVQFVPFNNFSANPEALATETLREIPQQLLGFMNQNNYLPMSHRLK*nkf
vv*n

Frame B:
n*fk*tqsriei*mftfkefgyl**irsidygf*qkr*tw*inicrtn*kn*---

---qvivsnwvqkkkyvvlrvfy*lmvklyhqchyliqpiskisfltlqrnhwmvllqnl
knilys*f*pmvksli*mkqfmkllrlqnnhlsl*lslvlvklhsii*idwmvmmvil*l
ilqvklqlvisfnsyhsiislqilkl*plkhfvkylnnylvl*tkiiiyq*vid*nkinl
*fki

Frame C:
ISLSKPRVELRFKCSHLKNLDICSKSDPLIMVFDKRGEHGESIFVGQTEKI---

---kslfpigfkkrstwc*gcfinlw*sytinviilsnqfqryhflrckeiigwcyfkis
kiyytlnfnrw*nl*ye*nss*nc*gfktitslysyhwyw*syir*ye*igw**w*ffn*
ffrsncns*yrsirtiq*flcks*sfsh*nts*ntstitwfyepk*lftnes*ikik*ic
slk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA705 (SSA705Q) /CSM/SS/SSA7-A/SSA705Q.Seq.d/                       1308   0.0
SLG357 (SLG357Q) /CSM/SL/SLG3-C/SLG357Q.Seq.d/                        938   0.0
CFH205 (CFH205Q) /CSM/CF/CFH2-A/CFH205Q.Seq.d/                        930   0.0
VFK812 (VFK812Q) /CSM/VF/VFK8-A/VFK812Q.Seq.d/                         54   3e-06
FC-BE16 (FC-BE16Q) /CSM/FC/FC-BE/FC-BE16Q.Seq.d/                       44   0.003
SSH753 (SSH753Q) /CSM/SS/SSH7-C/SSH753Q.Seq.d/                         40   0.045
SSG231 (SSG231Q) /CSM/SS/SSG2-B/SSG231Q.Seq.d/                         40   0.045
VFA828 (VFA828Q) /CSM/VF/VFA8-B/VFA828Q.Seq.d/                         38   0.18
FC-BG03 (FC-BG03Q) /CSM/FC/FC-BG/FC-BG03Q.Seq.d/                       38   0.18
VSC393 (VSC393Q) /CSM/VS/VSC3-D/VSC393Q.Seq.d/                         36   0.70
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1013  0.0  4
AL035521|AL035521.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA  project).    42  0.059  4
U40030|U40030.1 Caenorhabditis elegans cosmid T13C2.    46  0.10  2
AC130169|AC130169.3 Rattus norvegicus clone CH230-39E11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.21  3
AL161585|AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.    42  0.22  4
AL021961|AL021961.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA  project).    42  0.48  3
AQ868918|AQ868918.1 nbeb0032L05r CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0032L05r, genomic survey sequence.    34  0.53  2
BH741239|BH741239.1 gt30a09.g1 BoBuds01 Brassica oleracea genomic clone gt30a09 5', DNA sequence.    32  0.53  3
AC107639|AC107639.5 Mus musculus clone RP23-49H9, WORKING DRAFT SEQUENCE, 9 ordered pieces.    46  0.59  1
AL596064|AL596064.3 Zebrafish DNA sequence from clone XX-55K10 on chromosome 17.    46  0.59  1
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7YXU4) RecName: Full=Copine-A;  &AY332759_1(AY332759|pid:none)      137   2e-31
AM483321_7(AM483321|pid:none) Vitis vinifera contig VV79X000700....   130   5e-29
EF676600_1(EF676600|pid:none) Picea sitchensis clone WS02743_P13...   128   1e-28
AC119289_13(AC119289|pid:none) Oryza sativa (japonica cultivar-g...   127   3e-28
BC050240_1(BC050240|pid:none) Danio rerio copine I, mRNA (cDNA c...   126   7e-28
BC142290_1(BC142290|pid:none) Bos taurus copine III, mRNA (cDNA ...   125   2e-27
AL163912_1(AL163912|pid:none) Arabidopsis thaliana DNA chromosom...   123   5e-27
(Q8BT60) RecName: Full=Copine-3; AltName: Full=Copine III;  &AL6...   123   5e-27
BC151889_1(BC151889|pid:none) Danio rerio copine I, mRNA (cDNA c...   123   5e-27
AK220348_1(AK220348|pid:none) Mus musculus mRNA for mKIAA0636 pr...   123   5e-27
protein update 2009. 6. 8
PSORT 

 psg: 0.59  gvh: 0.31  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSA705 is nuc
5' end seq. ID SSA705F
5' end seq. 
>SSA705F.Seq
CAATTAGTTTAAGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATT
TGGATATTTGTAGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATG
GTGAATCAATATTTGTAGGACAAACTGAAAAAATTAA----------
Length of 5' end seq. 157
3' end seq. ID SSA705Z
3' end seq. 
>SSA705Z.Seq
----------ACAAGTCATTGTTTCCAATTGGGTTCAAAAAAAGAAGTACGTGGTGTTGA
GGGTGTTTTATTAACTTATGGTGAAGTTATACCATCAATGTCATTATCTTATCCAACCAA
TTTCAAAGATATCATTTCTTACGCTGCAAAGAAATCATTGGATGGTGTTACTTCAAAATC
TCAAAAATATACTATACTCTTAATTTTAACCGATGGTGAAATCTCTGATATGAATGAAAC
AGTTCATGAAATTGTTAAGGCTTCAAAACAATCACCTCTCTCTATAGTTATCATTGGTAT
TGGTGAAGCTACATTCGATAATATGAATAGATTGGATGGTGATGATGGTAATTCTTTAAC
TGATTCTTCAGGTCAAACTGCAACTCGTGATATCGTTCAATTCGTACCATTCAATAATTT
CTCTGCAAATCCTGAAGCTTTAGCCACTGAAACACTTCGTGAAATACCTCAACAATTACT
TGGTTTTATGAACCAAAATAATTATTTACCAATGAGTCATAGATTAAAATAAAATAAATT
TGTAGTTTAAAATA
Length of 3' end seq. 544
Connected seq. ID SSA705P
Connected seq. 
>SSA705P.Seq
CAATTAGTTTAAGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATT
TGGATATTTGTAGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATG
GTGAATCAATATTTGTAGGACAAACTGAAAAAATTAA----------ACAAGTCATTGTT
TCCAATTGGGTTCAAAAAAAGAAGTACGTGGTGTTGAGGGTGTTTTATTAACTTATGGTG
AAGTTATACCATCAATGTCATTATCTTATCCAACCAATTTCAAAGATATCATTTCTTACG
CTGCAAAGAAATCATTGGATGGTGTTACTTCAAAATCTCAAAAATATACTATACTCTTAA
TTTTAACCGATGGTGAAATCTCTGATATGAATGAAACAGTTCATGAAATTGTTAAGGCTT
CAAAACAATCACCTCTCTCTATAGTTATCATTGGTATTGGTGAAGCTACATTCGATAATA
TGAATAGATTGGATGGTGATGATGGTAATTCTTTAACTGATTCTTCAGGTCAAACTGCAA
CTCGTGATATCGTTCAATTCGTACCATTCAATAATTTCTCTGCAAATCCTGAAGCTTTAG
CCACTGAAACACTTCGTGAAATACCTCAACAATTACTTGGTTTTATGAACCAAAATAATT
ATTTACCAATGAGTCATAGATTAAAATAAAATAAATTTGTAGTTTAAAATA
Length of connected seq. 701
Full length Seq ID -
Full length Seq. -
Length of full length seq. -