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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA702
Library SS
(Link to library)
Clone ID SSA702
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSA702P
(Link to Original site)
Representative DNA sequence 
>SSA702 (SSA702Q) /CSM/SS/SSA7-A/SSA702Q.Seq.d/
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAXXXXXXXXXXATCAATGTATAGA
TATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTA
AATNTATATTGTAATTTTTATAAAAAAAAANAAAAAGAAAAAAAAAAACNAAAAAAAAAA
GAAAAAAGAAAAAATAATAATAATAATAATAATAATAATACAATAAATTTAAATAAAAAT
AAAGAATAAACCTTATAGTGGGTTTACCAATTTATA
sequence update 1999. 1.18
Translated Amino Acid sequence 
kv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rc
sssilrvnpshsyatlsnv*AVFNKKKYLKK---

---SMYRYCSVCVYAVRSSLLFSYFNLNXYCNFYKKKXKEKKKXKKKEKRKNNNNNNNNN
TINLNKNKE*tl*wvyqfi
Translated Amino Acid sequence (All Frames) 
Frame A:
kkfkkkiknnkk*kknkkknf*nspstfwcfc*anakvslspfalhyspqaqiissstnd
apqvssglihhipmqlsqmykqsltkkni*kk---

---inv*ilfrlcvcc*vqfal*ll*fkxil*fl*kkxkrkkktkkkrkkkk********
ynkfk*k*rinlivglpiy

Frame B:
kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltm
llkypqg*sitflcnslkcissl*qkkifkkk---

---SMYRYCSVCVYAVRSSLLFSYFNLNXYCNFYKKKXKEKKKXKKKEKRKNNNNNNNNN
TINLNKNKE*tl*wvyqfi

Frame C:
kv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rc
sssilrvnpshsyatlsnv*AVFNKKKYLKK---

---qcidivpsvcmllgpvcslvtli*xyivifikkxkkkkknxkkkkkekiiiiiiiii
q*i*ikiknkpysgftnl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-106
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   387  e-150  2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.027  1
AQ744644|AQ744644.1 HS_5504_A2_G03_SP6 RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1080 Col=6 Row=M, genomic survey sequence.    38  4.9  2
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  6.6  1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  6.6  1
AC102662|AC102662.2 Mus musculus clone RP23-144N11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  6.6  1
AL772217|AL772217.10 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-160K5.    42     46  2
dna update 2003. 7.30
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 418,117,844
protein update 2009. 6. 8
PSORT 

 psg: 0.71  gvh: 0.45  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.27  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSA702 is nuc
5' end seq. ID SSA702F
5' end seq. 
>SSA702F.Seq
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAA----------
Length of 5' end seq. 277
3' end seq. ID SSA702Z
3' end seq. 
>SSA702Z.Seq
----------ATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTT
TGCTCTTTAGTTACTTTAATTTAAATNTATATTGTAATTTTTATAAAAAAAAANAAAAAG
AAAAAAAAAAACNAAAAAAAAAAGAAAAAAGAAAAAATAATAATAATAATAATAATAATA
ATACAATAAATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATA
Length of 3' end seq. 229
Connected seq. ID SSA702P
Connected seq. 
>SSA702P.Seq
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAA----------ATCAATGTATAGA
TATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTA
AATNTATATTGTAATTTTTATAAAAAAAAANAAAAAGAAAAAAAAAAACNAAAAAAAAAA
GAAAAAAGAAAAAATAATAATAATAATAATAATAATAATACAATAAATTTAAATAAAAAT
AAAGAATAAACCTTATAGTGGGTTTACCAATTTATA
Length of connected seq. 506
Full length Seq ID -
Full length Seq. -
Length of full length seq. -