>SSA689 (SSA689Q) /CSM/SS/SSA6-D/SSA689Q.Seq.d/
CCCACGCGTCCGAATCAAAATTATCTAAATACAATATATCAAGAATTGTCGAATATGATT
CCAAATGCAAATGCTTTGAATAAATTGTACAAAAAAGCCCCAAATCCTTCAAAGCCATTA
GGAAACTTACCAATGGTAGTTATGTCCTCTGATCCAGATGATGAACCATCTTGGTTTGAA
AGACAAATTAAATTATCTGAATTATCTTCAAACTCTATTCAATTAAATTGTCAAAATCAT
TTCGTACCATTTTATCAACCAAAATTAGTTATAAATGCAATTGAAGTTTTAAGTGCTAAA
TCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTATTATAATAATAAAATAATAA
CTATAAAAATAATAATAATXXXXXXXXXX

PTRPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPMVVMSSDPDDEPSWFE
RQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSAKSK*i*ffpnffkiiiiik**
l*k***---

Frame A:
PTRPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPMVVMSSDPDDEPSWFE
RQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSAKSK*i*ffpnffkiiiiik**
l*k***---


Frame B:
prvrikii*iqyikncri*fqmqml*inctkkpqilqsh*etyqw*lcpliqmmnhlglk
dklnylnylqtlfn*ivkiisyhfinqn*l*mqlkf*vlnqnkfnffptflkll***nnn
yknnn---


Frame C:
hasesklskynisriveydskckcfe*ivqkspksfkairkltngsyvl*sr**tilv*k
tn*ii*iifklysiklsksfrtilstkisykcn*sfkc*ikinlifsqlf*nyynnkiit
ikiii---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA689 (SSA689Q) /CSM/SS/SSA6-D/SSA689Q.Seq.d/                        587   e-167
SSH877 (SSH877Q) /CSM/SS/SSH8-D/SSH877Q.Seq.d/                        563   e-160
SSH202 (SSH202Q) /CSM/SS/SSH2-A/SSH202Q.Seq.d/                        281   4e-75
SSB648 (SSB648Q) /CSM/SS/SSB6-B/SSB648Q.Seq.d/                         38   0.095
SLG831 (SLG831Q) /CSM/SL/SLG8-B/SLG831Q.Seq.d/                         38   0.095
SSG882 (SSG882Q) /CSM/SS/SSG8-D/SSG882Q.Seq.d/                         36   0.38
SSG314 (SSG314Q) /CSM/SS/SSG3-A/SSG314Q.Seq.d/                         36   0.38
SSE753 (SSE753Q) /CSM/SS/SSE7-C/SSE753Q.Seq.d/                         36   0.38
SLK344 (SLK344Q) /CSM/SL/SLK3-B/SLK344Q.Seq.d/                         36   0.38
SLJ753 (SLJ753Q) /CSM/SL/SLJ7-C/SLJ753Q.Seq.d/                         36   0.38

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.   563  e-157  1
AZ454843|AZ454843.1 1M0256P23R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0256P23 R, DNA sequence.    44  1.2  1
BM597427|BM597427.1 17000687496066 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449711169 5', mRNA sequence.    40  2.1  2
BM581369|BM581369.1 17000687244247 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449689000 5', mRNA sequence.    40  2.3  2
BM600995|BM600995.1 17000687067184 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449679885 5', mRNA sequence.    32  3.3  3
AC114725|AC114725.4 Rattus norvegicus clone CH230-97E10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  4.9  1
AC123641|AC123641.3 Mus musculus clone RP23-16D16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  4.9  1
CC071179|CC071179.1 CSU-K33r.26G7.T7 CSU-K33r Aedes aegypti genomic clone CSU-K33r.26G7 , DNA sequence.    42  4.9  1
AC107757|AC107757.3 Mus musculus clone RP23-207L14, WORKING DRAFT SEQUENCE, 13 ordered pieces.    42  4.9  1
AC139522|AC139522.1 Rattus norvegicus clone CH230-232B21, WORKING DRAFT SEQUENCE, 57 unordered pieces.    42  4.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromoso...   198   4e-50
CP000875_1040(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    34   1.4
AM920428_15(AM920428|pid:none) Penicillium chrysogenum Wisconsin...    33   2.3
CP001344_247(CP001344|pid:none) Cyanothece sp. PCC 7425, complet...    33   2.3
T26466(T26466)hypothetical protein Y11D7A.12 - Caenorhabditis el...    33   4.0
AL032632_11(AL032632|pid:none) Caenorhabditis elegans YAC Y11D7A...    33   4.0
CP001056_2865(CP001056|pid:none) Clostridium botulinum B str. Ek...    33   4.0
AP007169_497(AP007169|pid:none) Aspergillus oryzae RIB40 genomic...    32   5.2
CS490762_1(CS490762|pid:none) Sequence 3 from Patent WO200700452...    32   6.8
AK300284_1(AK300284|pid:none) Homo sapiens cDNA FLJ51085 complet...    32   6.8

 psg: 0.67  gvh: 0.40  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSA689 is cyt

>SSA689F.Seq
CCCACGCGTCCGAATCAAAATTATCTAAATACAATATATCAAGAATTGTCGAATATGATT
CCAAATGCAAATGCTTTGAATAAATTGTACAAAAAAGCCCCAAATCCTTCAAAGCCATTA
GGAAACTTACCAATGGTAGTTATGTCCTCTGATCCAGATGATGAACCATCTTGGTTTGAA
AGACAAATTAAATTATCTGAATTATCTTCAAACTCTATTCAATTAAATTGTCAAAATCAT
TTCGTACCATTTTATCAACCAAAATTAGTTATAAATGCAATTGAAGTTTTAAGTGCTAAA
TCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTATTATAATAATAAAATAATAA
CTATAAAAATAATAATAAT----------