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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA683
Library SS
(Link to library)
Clone ID SSA683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15499-1
Original site URL
Representative seq. ID SSA683E
(Link to Original site)
Representative DNA sequence 
>SSA683 (SSA683Q) /CSM/SS/SSA6-D/SSA683Q.Seq.d/
AAGAAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAG
AGAAAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAG
AAAAGCCTTTACAATCGGTCTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACC
CAAGCTNNAACTGCTAATACCAATTTNGCCCATTGATCGTCATATTAAAANGAAAGTTCC
ACCAGATCCATTGGTTTTTTATTAAAATGCCCTCGATCAAAATTAGTTTGGGCATGGGTG
AAGATCTCTACAGGTAGTTCAACTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCA
TATATGAGATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAG
AAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCA
GGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACT
GTTACATCAGAGACAACTCACACATGGAAACAAACTCTCACTGAGGGAACTTATATTGTT
TATCAAAATGTTCTTGTTTATGCATATACAATAGTATTATCACTAAATCAAACTAATACT
ATAAATCAATATAACCCAGGTATGAATTTGAGATATATCCAACAAATAGATCGTGCNGTT
ATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAGATGCCACATGG
GATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTTGCAAATCNAAGTAAATGGAGA
TCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCATGATTTTTATT
ATTTCACTAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
kklnlnwsy*nlkknikks*rkkginklllekvtlf*vkkkslynrslpsiiqktyliwt
qaxtantnxah*ssy*XESSTRSIGFLLKCPRSKLVWAWVKISTGSSTTSLIGSFTPCAA
YMRYIKSYPVVGTVEQTMEKKKGFTSRFNASTEIKASASAGFFGCEASLEVTTGFEYEET
VTSETTHTWKQTLTEGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMNLRYIQQIDRAV
MFVPINRDDPFTLRYQDATWDPVEYDSLINYLVANXSKWRSDS*rnnqkkvlnnkimifi
islk
Translated Amino Acid sequence (All Frames) 
Frame A:
kklnlnwsy*nlkknikks*rkkginklllekvtlf*vkkkslynrslpsiiqktyliwt
qaxtantnxah*ssy*XESSTRSIGFLLKCPRSKLVWAWVKISTGSSTTSLIGSFTPCAA
YMRYIKSYPVVGTVEQTMEKKKGFTSRFNASTEIKASASAGFFGCEASLEVTTGFEYEET
VTSETTHTWKQTLTEGTYIVYQNVLVYAYTIVLSLNQTNTINQYNPGMNLRYIQQIDRAV
MFVPINRDDPFTLRYQDATWDPVEYDSLINYLVANXSKWRSDS*rnnqkkvlnnkimifi
islk


Frame B:
rn*i*igvikt*krtsrkvrerrv*tnyywkrlhcfk*rrkaftiglflq*skkri*fgp
klxllipixpidrhikxkvppdplvfy*naldqn*fghg*rslqvvqllv**avlllvlh
i*dtlnhiqllvplnklwkrkkallqdlmpvlklrqvhqqgslvvkhhsk*plvsnmkkl
lhqrqlthgnklslrelilfikmflfmhiq*yyh*iklil*initqv*i*disnk*ivxl
clyqsivmihslfvikmphgiqwsmih*ltiwlqixvngdlihkeitkkrf*iiks*fll
fh*


Frame C:
eiefklellklekehqeklekegykqitigkgytvlskeekplqsvssfnnpknvfnldp
sxnc*yqfxplivilkxkfhqihwffikmpsikislgmgedlyr*fny*fnrqfyslcci
yeih*iisscwyr*tnygkekrlyfki*cqy*n*gkcisrvlwl*sitrsdhwfri*rnc
yirdnshmetnsh*gnlyclskcsclciynsiitksn*yyksi*pryefeiyptnrscxy
vctnqs**sihsslsrchmgssgv*fin*lfgcksk*mei*fikk*pkkgfk**nhdfyy
ftk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA683 (SSA683Q) /CSM/SS/SSA6-D/SSA683Q.Seq.d/                       1731   0.0
VFF853 (VFF853Q) /CSM/VF/VFF8-C/VFF853Q.Seq.d/                       1653   0.0
VFL580 (VFL580Q) /CSM/VF/VFL5-D/VFL580Q.Seq.d/                       1639   0.0
VHG246 (VHG246Q) /CSM/VH/VHG2-B/VHG246Q.Seq.d/                       1614   0.0
VHI811 (VHI811Q) /CSM/VH/VHI8-A/VHI811Q.Seq.d/                       1608   0.0
VFI774 (VFI774Q) /CSM/VF/VFI7-D/VFI774Q.Seq.d/                       1608   0.0
VHD159 (VHD159Q) /CSM/VH/VHD1-C/VHD159Q.Seq.d/                       1606   0.0
VFH148 (VFH148Q) /CSM/VF/VFH1-B/VFH148Q.Seq.d/                       1604   0.0
VFL719 (VFL719Q) /CSM/VF/VFL7-A/VFL719Q.Seq.d/                       1584   0.0
VFD740 (VFD740Q) /CSM/VF/VFD7-B/VFD740Q.Seq.d/                       1554   0.0
own update 2002.12.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore  germination protein.   573   0.0    5
U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.    86   2e-47  7
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   7e-04  17
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    50   7e-04  10
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    30   0.006  16
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   0.010  27
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5.    34   0.022  13
AE014309|AE014309.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6 of 11 of the complete sequence.    34   0.032  2
AC011788|AC011788.3 Homo sapiens clone RP11-17C16, WORKING DRAFT SEQUENCE, 12 unordered pieces.    34   0.032  2
AL356376|AL356376.9 Human DNA sequence from clone RP11-155N20 on chromosome 13. Contains STSs and GSSs.    34   0.033  2
dna update 2003.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    52   2e-05
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    48   4e-04
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    46   0.002
protein update 2009. 3. 5
PSORT 

 psg: 0.83  gvh: 0.57  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SSA683 is mit
5' end seq. ID SSA683F
5' end seq. 
>SSA683F.Seq
AAGAAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAG
AGAAAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAG
AAAAGCCTTTACAATCGGTCTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACC
AAGCTCAAACTGCTAATACCAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCAC
CAGATCCATTGGTTTTTATTAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGA
TCTCTACAGGTAGTTCAACTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATA
TGAGATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAGAAAA
AAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGT
TCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTA
CAT----------
Length of 5' end seq. 543
3' end seq. ID SSA683Z
3' end seq. 
>SSA683Z.Seq
----------TTTAATTTGGACCCAAGCTTCAACTGCTAATACCAATTTGGCCCATTGAT
CGTCATATTAAAAAGAAAGTTCCACCAGATCCATTGGTTTTTTATTAAAATGCCCTCGAT
CAAAATTAGTTTGGGCATGGGTGAAGATCTCTACAGGTAGTTCAACTACTAGTTTAATAG
GCAGTTTTACTCCTTGTGCTGCATATATGAGATACATTAAATCATATCCAGTTGTTGGTA
CCGTTGAACAAACTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTG
AAATTAAGGCAAGTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCA
CTGGTTTCGAATATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAACTC
TCACTGAGGGAACTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAGTAT
TATCACTAAATCAAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGATATA
TCCAACAAATAGATCGTGCNGTTATGTTTGTACCAATCAATCGTGATGATCCATTCACTC
TTCGTTATCAAGATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATTTGG
TTGCAAATCNAAGTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAA
ATAATAAAATCATGATTTTTATTATTTCACTAAAA
Length of 3' end seq. 745
Connected seq. ID SSA683P
Connected seq. 
>SSA683P.Seq
AAGAAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAG
AGAAAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAG
AAAAGCCTTTACAATCGGTCTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACC
AAGCTCAAACTGCTAATACCAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCAC
CAGATCCATTGGTTTTTATTAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGA
TCTCTACAGGTAGTTCAACTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATA
TGAGATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAGAAAA
AAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGT
TCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACTGTTA
CAT----------TTTAATTTGGACCCAAGCTTCAACTGCTAATACCAATTTGGCCCATT
GATCGTCATATTAAAAAGAAAGTTCCACCAGATCCATTGGTTTTTTATTAAAATGCCCTC
GATCAAAATTAGTTTGGGCATGGGTGAAGATCTCTACAGGTAGTTCAACTACTAGTTTAA
TAGGCAGTTTTACTCCTTGTGCTGCATATATGAGATACATTAAATCATATCCAGTTGTTG
GTACCGTTGAACAAACTATGGAAAAGAAAAAAGGCTTTACTTCAAGATTTAATGCCAGTA
CTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGA
CCACTGGTTTCGAATATGAAGAAACTGTTACATCAGAGACAACTCACACATGGAAACAAA
CTCTCACTGAGGGAACTTATATTGTTTATCAAAATGTTCTTGTTTATGCATATACAATAG
TATTATCACTAAATCAAACTAATACTATAAATCAATATAACCCAGGTATGAATTTGAGAT
ATATCCAACAAATAGATCGTGCNGTTATGTTTGTACCAATCAATCGTGATGATCCATTCA
CTCTTCGTTATCAAGATGCCACATGGGATCCAGTGGAGTATGATTCATTAATTAACTATT
TGGTTGCAAATCNAAGTAAATGGAGATCTGATTCATAAAGAAATAACCAAAAAAAGGTTT
TAAATAATAAAATCATGATTTTTATTATTTCACTAAAA
Length of connected seq. 1288
Full length Seq ID SSA683E
Full length Seq. 
>SSA683E.Seq
AAGAAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAG
AGAAAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAG
AAAAGCCTTTACAATCGGTCTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACC
CAAGCTNNAACTGCTAATACCAATTTNGCCCATTGATCGTCATATTAAAANGAAAGTTCC
ACCAGATCCATTGGTTTTTTATTAAAATGCCCTCGATCAAAATTAGTTTGGGCATGGGTG
AAGATCTCTACAGGTAGTTCAACTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCA
TATATGAGATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAAAAG
AAAAAAGGCTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCA
GGGTTCTTTGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGAAGAAACT
GTTACATCAGAGACAACTCACACATGGAAACAAACTCTCACTGAGGGAACTTATATTGTT
TATCAAAATGTTCTTGTTTATGCATATACAATAGTATTATCACTAAATCAAACTAATACT
ATAAATCAATATAACCCAGGTATGAATTTGAGATATATCCAACAAATAGATCGTGCNGTT
ATGTTTGTACCAATCAATCGTGATGATCCATTCACTCTTCGTTATCAAGATGCCACATGG
GATCCAGTGGAGTATGATTCATTAATTAACTATTTGGTTGCAAATCNAAGTAAATGGAGA
TCTGATTCATAAAGAAATAACCAAAAAAAGGTTTTAAATAATAAAATCATGATTTTTATT
ATTTCACTAAAA
Length of full length seq. 912