>SSA680 (SSA680Q) /CSM/SS/SSA6-D/SSA680Q.Seq.d/
XXXXXXXXXXTTACATTAGTNGCATTATTCAAACGTGTTCANNAAAAAGGTAGAAAGGCA
TTATTTGTTATGTCAATCTTGTTATGTATTTTCAATGTACTTTCAACTTTATTATTATTA
AGATTAAACAAAGCACTCTGTGAAGATGCCACTGATGGTCTTTCATTACCATTTTCAATG
GAGAAAAGTATTCTTGATTCTGGTATCTGTAGTAAATTCAAAGGAAGTGATTCCCTCTTT
TCTTGGGGTCCATCCATCGGTTGGTATTGCTCACTTGCAGCTGCAATTGTCTCATTTATT
ACTATTTTCTTGACTTCTTCCATCTTACACACTCGTAAATTCGGATATCATGTCATTCAC
TAGAGACTCTTATGAGANTTTAAAAAAAAAAAAAAAA

---TLVALFKRVXXKGRKALFVMSILLCIFNVLSTLLLLRLNKALCEDATDGLSLPFSME
KSILDSGICSKFKGSDSLFSWGPSIGWYCSLAAAIVSFITIFLTSSILHTRKFGYHVIH*
rll*xfkkkkk

Frame A:
---yisxiiqtcsxkr*kgiicyvnlvmyfqctfnfiiikikqstl*rch*wsfitifng
ekys*fwyl**iqrk*fplflgsihrlvlltcscncliyyyfldffhlths*irischsl
etlmrx*kkkk


Frame B:
---TLVALFKRVXXKGRKALFVMSILLCIFNVLSTLLLLRLNKALCEDATDGLSLPFSME
KSILDSGICSKFKGSDSLFSWGPSIGWYCSLAAAIVSFITIFLTSSILHTRKFGYHVIH*
rll*xfkkkkk


Frame C:
---h*xhysnvfxkkverhyllcqscyvfsmyfqlyyy*d*tkhsvkmplmvfhyhfqwr
kvflilvsvvnskevipsflgvhpsvgiahlqlqlshlllfs*llpsytlvnsdimsftr
dsyexlkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA680 (SSA680Q) /CSM/SS/SSA6-D/SSA680Q.Seq.d/                        712   0.0
VSG636 (VSG636Q) /CSM/VS/VSG6-B/VSG636Q.Seq.d/                        696   0.0
SSL692 (SSL692Q) /CSM/SS/SSL6-D/SSL692Q.Seq.d/                        696   0.0
SSL749 (SSL749Q) /CSM/SS/SSL7-C/SSL749Q.Seq.d/                        618   e-176
SSL665 (SSL665Q) /CSM/SS/SSL6-C/SSL665Q.Seq.d/                        591   e-168
VFL193 (VFL193Q) /CSM/VF/VFL1-D/VFL193Q.Seq.d/                         38   0.097
SSM261 (SSM261Q) /CSM/SS/SSM2-C/SSM261Q.Seq.d/                         38   0.097
CFF645 (CFF645Q) /CSM/CF/CFF6-B/CFF645Q.Seq.d/                         38   0.097
AFH258 (AFH258Q) /CSM/AF/AFH2-C/AFH258Q.Seq.d/                         38   0.097
AFH252 (AFH252Q) /CSM/AF/AFH2-C/AFH252Q.Seq.d/                         38   0.097

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BB504737|BB504737.2 Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630049N15, 3' end partial sequence.    46  0.32  1
AR085704|AR085704.1 Sequence 1 from patent US 5981838.            44  1.1  2
L35928|L35928.1 Streptococcus salivarius primer-independent glucosyltransferase (gtfm) gene, complete cds.    44  1.1  2
AC116429|AC116429.3 Papio anubis clone RP41-1A14, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48  1.1  3
AG080349|AG080349.1 Pan troglodytes DNA, clone: PTB-076H19.F.     44  1.3  1
AZ931099|AZ931099.1 474.dhz62b03.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz62b03.s1, DNA sequence.    44  1.3  1
AC018810|AC018810.2 Homo sapiens chromosome 3p clone RP11-1120H22, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  1.9  6
AP001816|AP001816.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:563D14.    30  1.9  8
BX470194|BX470194.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DASS-263B11.    34  2.8  4
AC026187|AC026187.4 Homo sapiens chromosome 3 clone RP11-306H5 map 3p, complete sequence.    40  3.0  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P08) RecName: Full=Putative uncharacterized transmembrane pr...    37   0.16
CP001329_246(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    33   2.3
CR940348_212(CR940348|pid:none) Theileria annulata strain Ankara...    32   5.2
CP000423_196(CP000423|pid:none) Lactobacillus casei ATCC 334, co...    32   6.7
AF205407_1(AF205407|pid:none) Neurospora crassa QDE3 protein (qd...    32   6.7
(Q6BHF8) RecName: Full=Autophagy-related protein 23;  &CR382139_...    32   6.7
AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complet...    32   6.7
CP000475_16(CP000475|pid:none) Arthrobacter aurescens TC1 plasmi...    32   8.7

 psg: 0.50  gvh: 0.70  alm: 0.22  top: 0.07  tms: 0.13  mit: 0.47  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSA680 is mit

>SSA680Z.Seq
----------TTACATTAGTNGCATTATTCAAACGTGTTCANNAAAAAGGTAGAAAGGCA
TTATTTGTTATGTCAATCTTGTTATGTATTTTCAATGTACTTTCAACTTTATTATTATTA
AGATTAAACAAAGCACTCTGTGAAGATGCCACTGATGGTCTTTCATTACCATTTTCAATG
GAGAAAAGTATTCTTGATTCTGGTATCTGTAGTAAATTCAAAGGAAGTGATTCCCTCTTT
TCTTGGGGTCCATCCATCGGTTGGTATTGCTCACTTGCAGCTGCAATTGTCTCATTTATT
ACTATTTTCTTGACTTCTTCCATCTTACACACTCGTAAATTCGGATATCATGTCATTCAC
TAGAGACTCTTATGAGANTTTAAAAAAAAAAAAAAAA