>SSA676 (SSA676Q) /CSM/SS/SSA6-D/SSA676Q.Seq.d/
XXXXXXXXXXTTAACCAAATGGTTGATAAGAAAATTTCAACACACACAAGTTTAACAACA
ACCAATGGTGTATATATCACTGAAAATAAAAAGAAATTACCAATTATCGATGTACCAGGT
AATGGAAAGGCAAAAGCATCATTACCAAAAATTCTTTCAAATTCTGCTTGTATTATTTAT
GTAATTGATGGTACAACTTTTATTGATAACTCAACCCAGGAAGCTCAGTATTTATATGAT
ATTTTAACAAATGAATCAGTTTATCAAAAGAAGATACCAGTTTTAGTATTTAATAATAAA
ATGGATTTAGATTCAACAATTGATACAGAACAAGTTAAAAATATTTTAGAGAGAGAATTG
GATGATTTAAGAAGAACTCGTGGTGCAACACCAATAGTTTTAGGTCAAGAGGAGGATAAA
AAAGATATTTATTTGGGTATTGAAGGTACACCATTCCAATTTGATCACCTCCCAAATGAC
GTTCAATTTTTTAATGGTTCCGCTTCACCTTCAAATGGTGAATTAAAAGAGATTGATGAT
ATTAAAAATTTCATTCAAACTACAACTCTTTAATAACCTTTTGGAAAAA

---NQMVDKKISTHTSLTTTNGVYITENKKKLPIIDVPGNGKAKASLPKILSNSACIIYV
IDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDSTIDTEQVKNILERELD
DLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFDHLPNDVQFFNGSASPSNGELKEIDDI
KNFIQTTTL**pfgk

Frame A:
---*png**enfnthkfnnnqwciyh*k*keitnyrctr*wkgksiitknsfkfclyylc
n*wynfy**lnpgssvfi*yfnk*islskedtsfsi***ngfrfnn*yrts*kyfrerig
*fkknswcntnsfrsrgg*krylfgy*rytipi*sppk*rsif*wfrftfkw*ikrd**y
*kfhsnynslitfwk


Frame B:
---NQMVDKKISTHTSLTTTNGVYITENKKKLPIIDVPGNGKAKASLPKILSNSACIIYV
IDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDSTIDTEQVKNILERELD
DLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFDHLPNDVQFFNGSASPSNGELKEIDDI
KNFIQTTTL**pfgk


Frame C:
---tkwlirkfqhtqv*qqpmvyislkikrnyqlsmyqvmerqkhhyqkffqillvlfm*
lmvqlllitqprklsiymif*qmnqfikrryqf*yliikwi*iqqliqnklkif*renwm
i*eelvvqhq*f*vkrrikkifiwvlkvhhsnlitsqmtfnflmvplhlqmvn*krlmil
kisfklqlfnnllek

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA676 (SSA676Q) /CSM/SS/SSA6-D/SSA676Q.Seq.d/                       1148   0.0
SSJ121 (SSJ121Q) /CSM/SS/SSJ1-A/SSJ121Q.Seq.d/                        674   0.0
SSJ116 (SSJ116Q) /CSM/SS/SSJ1-A/SSJ116Q.Seq.d/                        321   7e-87
CHN635 (CHN635Q) /CSM/CH/CHN6-B/CHN635Q.Seq.d/                         40   0.037
VFH447 (VFH447Q) /CSM/VF/VFH4-B/VFH447Q.Seq.d/                         38   0.15
VSJ853 (VSJ853Q) /CSM/VS/VSJ8-C/VSJ853Q.Seq.d/                         36   0.58
VSH841 (VSH841Q) /CSM/VS/VSH8-B/VSH841Q.Seq.d/                         36   0.58
VSG412 (VSG412Q) /CSM/VS/VSG4-A/VSG412Q.Seq.d/                         36   0.58
VSF651 (VSF651Q) /CSM/VS/VSF6-C/VSF651Q.Seq.d/                         36   0.58
VHQ125 (VHQ125Q) /CSM/VH/VHQ1-B/VHQ125Q.Seq.d/                         36   0.58

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  7e-05  11
AC124964|AC124964.14 Medicago truncatula clone mth2-27c4, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  5e-04  5
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36  0.006  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32  0.032  13
AX344572|AX344572.1 Sequence 23 from Patent WO0200932.            36  0.056  9
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                     34  0.066  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.13  12
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    32  0.14  10
AC021887|AC021887.4 Homo sapiens clone RP11-777M17, complete sequence.    36  0.14  6
AC133444|AC133444.1 Rattus norvegicus clone CH230-221A14, *** SEQUENCING IN PROGRESS ***, 42 unordered pieces.    38  0.17  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB005237_7(AB005237|pid:none) Arabidopsis thaliana genomic DNA, ...    86   6e-16
BT035249_1(BT035249|pid:none) Zea mays full-length cDNA clone ZM...    84   2e-15
AY735577_1(AY735577|pid:none) Arabidopsis thaliana hypothetical ...    84   4e-15
EU965884_1(EU965884|pid:none) Zea mays clone 289715 signal recog...    83   6e-15
AC149293_1(AC149293|pid:none) Medicago truncatula clone mth2-78c...    81   2e-14
AK228146_1(AK228146|pid:none) Arabidopsis thaliana mRNA for sign...    72   1e-11
AP003528_10(AP003528|pid:none) Oryza sativa Japonica Group genom...    67   3e-10
BT049716_1(BT049716|pid:none) Salmo salar clone ssal-rgb-551-181...    67   5e-10
AY325214_1(AY325214|pid:none) Rattus norvegicus Ab2-417 mRNA, co...    67   5e-10
AY325230_1(AY325230|pid:none) Rattus norvegicus Ba1-667 mRNA, co...    67   5e-10

 psg: 0.83  gvh: 0.43  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar

>> prediction for SSA676 is nuc

>SSA676Z.Seq
----------TTAACCAAATGGTTGATAAGAAAATTTCAACACACACAAGTTTAACAACA
ACCAATGGTGTATATATCACTGAAAATAAAAAGAAATTACCAATTATCGATGTACCAGGT
AATGGAAAGGCAAAAGCATCATTACCAAAAATTCTTTCAAATTCTGCTTGTATTATTTAT
GTAATTGATGGTACAACTTTTATTGATAACTCAACCCAGGAAGCTCAGTATTTATATGAT
ATTTTAACAAATGAATCAGTTTATCAAAAGAAGATACCAGTTTTAGTATTTAATAATAAA
ATGGATTTAGATTCAACAATTGATACAGAACAAGTTAAAAATATTTTAGAGAGAGAATTG
GATGATTTAAGAAGAACTCGTGGTGCAACACCAATAGTTTTAGGTCAAGAGGAGGATAAA
AAAGATATTTATTTGGGTATTGAAGGTACACCATTCCAATTTGATCACCTCCCAAATGAC
GTTCAATTTTTTAATGGTTCCGCTTCACCTTCAAATGGTGAATTAAAAGAGATTGATGAT
ATTAAAAATTTCATTCAAACTACAACTCTTTAATAACCTTTTGGAAAAA