>SSA675 (SSA675Q) /CSM/SS/SSA6-D/SSA675Q.Seq.d/
GTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAATTAATCTTGTTAATCAAA
CAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGAAAATGAATTTTTAAAAG
ATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAACTAGTTCAATTAGAAATAGTA
AAGATTCAACTTCACAATTTAATCGTCTAACACAATCCATTTCACCATCATCAGCTATTG
ATATAACCCAATCGATGACCTCTGGTTTAGATATTCCAAAGGTAACCTCTGCTTCATTTT
ATCCAACAACAACAACGACAACAACAAAATCCACAACAATGACATCTTCATCAACTTTAC
CAACCTCGAAAACCACCAGAACCCCAATGGAAGAAATTAAATACCTCAGAGAACAATTAG
AAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAANNATGGGATAAATTAATTGAATCTG
CTCCAAAGAAGAGAGAGGTTAATTCTTCCACAAATTCAAATCCTCCTTCAACTGGAAACT
CATTATTAAATTCACCAAATATGTCCAGTAGTATGANTAATTAATAATAAATATAAAAAA
TATAAAAAAAAAAAAAGGAAAAAAAAAAAGTAAACAAAAACATAACCAAG

FDDDLASKLKQVEINLVNQTVEALLEENKSLKQENEFLKDRIMQFRVEIEKKTSSIRNSK
DSTSQFNRLTQSISPSSAIDITQSMTSGLDIPKVTSASFYPTTTTTTTKSTTMTSSSTLP
TSKTTRTPMEEIKYLREQLEEKDKTIVEQKKXWDKLIESAPKKREVNSSTNSNPPSTGNS
LLNSPNMSSSMXN***i*ki*kkkkekkkvnknitk

Frame A:
vlmmiwlqnlnrlklillikqlkhy*rrikv*nkkmnf*kielcnlesrlrrklvqleiv
kiqlhnliv*hnpfhhhqlli*pnr*plv*ifqr*pllhfiqqqqrqqqnpqq*hlhqly
qprkppepqwkklntsenn*kkrikl*lsrkxxgin*lnllqrrerlilpqiqillqlet
hy*ihqicpvv*xinnkykkykkkkrkkkk*tkt*p


Frame B:
f***fgfkt*tg*n*sc*sns*siirge*kfktrk*ifkr*nyai*srd*een*fn*k**
rfnfti*ssntihftiisy*ynpiddlwfryskgnlcfilsnnnndnnkihnndifinft
nlenhqnpngrn*ipqrtirrkg*nys*aekxmg*in*icskeerg*ffhkfkssfnwkl
iikftkyvq*yx*liiniknikkkkgkkkskqkhnq


Frame C:
FDDDLASKLKQVEINLVNQTVEALLEENKSLKQENEFLKDRIMQFRVEIEKKTSSIRNSK
DSTSQFNRLTQSISPSSAIDITQSMTSGLDIPKVTSASFYPTTTTTTTKSTTMTSSSTLP
TSKTTRTPMEEIKYLREQLEEKDKTIVEQKKXWDKLIESAPKKREVNSSTNSNPPSTGNS
LLNSPNMSSSMXN***i*ki*kkkkekkkvnknitk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA675 (SSA675Q) /CSM/SS/SSA6-D/SSA675Q.Seq.d/                        601   e-171
SSG748 (SSG748Q) /CSM/SS/SSG7-B/SSG748Q.Seq.d/                        579   e-164
AFM705 (AFM705Q) /CSM/AF/AFM7-A/AFM705Q.Seq.d/                         40   0.041
VSC721 (VSC721Q) /CSM/VS/VSC7-A/VSC721Q.Seq.d/                         38   0.16
CFJ386 (CFJ386Q) /CSM/CF/CFJ3-D/CFJ386Q.Seq.d/                         38   0.16
VSF354 (VSF354Q) /CSM/VS/VSF3-C/VSF354Q.Seq.d/                         36   0.64
VSE532 (VSE532Q) /CSM/VS/VSE5-B/VSE532Q.Seq.d/                         36   0.64
VSE519 (VSE519Q) /CSM/VS/VSE5-A/VSE519Q.Seq.d/                         36   0.64
VSD860 (VSD860Q) /CSM/VS/VSD8-C/VSD860Q.Seq.d/                         36   0.64
AHA161 (AHA161Q) /CSM/AH/AHA1-C/AHA161Q.Seq.d/                         36   0.64

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   4e-04  15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   5e-04  11
AC094565|AC094565.6 Rattus norvegicus clone CH230-4A12, WORKING DRAFT SEQUENCE, 25 unordered pieces.    32   0.004  8
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    34   0.005  10
AC128982|AC128982.4 Rattus norvegicus clone CH230-1J1, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42   0.006  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    30   0.010  15
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    38   0.011  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.018  14
AC103835|AC103835.1 Homo sapiens chromosome 8 clone RP11-1137M22 map 8, LOW-PASS SEQUENCE SAMPLING.    40   0.024  2
AC110129|AC110129.5 Rattus norvegicus clone CH230-272G15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40   0.042  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001230_922(CP001230|pid:none) Persephonella marina EX-H1, comp...    45   0.001
AM886060_16(AM886060|pid:none) Geobacillus stearothermophilus pl...    43   0.007
BA000043_2663(BA000043|pid:none) Geobacillus kaustophilus HTA426...    42   0.020
BA000043_1944(BA000043|pid:none) Geobacillus kaustophilus HTA426...    40   0.046
(Q6PCQ0) RecName: Full=IQ domain-containing protein E;  &BC05922...    40   0.046
DQ868502_35(DQ868502|pid:none) Geobacillus stearothermophilus st...    40   0.046
CR628337_433(CR628337|pid:none) Legionella pneumophila str. Lens...    39   0.17
(P21249) RecName: Full=Major antigen; AltName: Full=Myosin-like ...    38   0.23
AY779515_1(AY779515|pid:none) Legionella pneumophila VipA (vipA)...    38   0.23
CR628337_1094(CR628337|pid:none) Legionella pneumophila str. Len...    37   0.39

 psg: 0.75  gvh: 0.26  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSA675 is nuc

>SSA675E.Seq
GTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAATTAATCTTGTTAATCAAA
CAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGAAAATGAATTTTTAAAAG
ATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAACTAGTTCAATTAGAAATAGTA
AAGATTCAACTTCACAATTTAATCGTCTAACACAATCCATTTCACCATCATCAGCTATTG
ATATAACCCAATCGATGACCTCTGGTTTAGATATTCCAAAGGTAACCTCTGCTTCATTTT
ATCCAACAACAACAACGACAACAACAAAATCCACAACAATGACATCTTCATCAACTTTAC
CAACCTCGAAAACCACCAGAACCCCAATGGAAGAAATTAAATACCTCAGAGAACAATTAG
AAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAANNATGGGATAAATTAATTGAATCTG
CTCCAAAGAAGAGAGAGGTTAATTCTTCCACAAATTCAAATCCTCCTTCAACTGGAAACT
CATTATTAAATTCACCAAATATGTCCAGTAGTATGANTAATTAATAATAAATATAAAAAA
TATAAAAAAAAAAAAAGGAAAAAAAAAAAGTAAACAAAAACATAACCAAG