>SSA674 (SSA674Q) /CSM/SS/SSA6-D/SSA674Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTTTAGTTAAAATCTATTAATTACAATTTATTTATATACTT
TTTTTTTTTGATTTTTTTTATTAATAAAGAAATGGTTGTATGATTAATTTAATCAAAAGT
AATTGGCACGTCTCTCTTTGAACCATTTAATGTGGCAGTAATTTTTGGATGAGACATTGC
GAATTGTTTGAATTCATTGAAAGATAATTTACCATCACCATTAACATCTAAAGATGAGAA
AGCACCATCTGCAAAGATTTGTGCCATTTCCTCTGAAAAATTATTTAAATCATCCTTGTT
GACTTCTTCATTAGTTTGATATGATAATGCTTTGAAACCTGAAATCCATGCTTGTTGAAA
CATTTGTGATAATTCACTCTTTGTAATATATCCATTTCCATCTATATCATATGCTTTAAA
TGATAATTCGAGTTTTTCTTCGGCAGTACCTTTACATAAAATTGATAAACCACTAATAAA
TTCTTGAAGATCAACAGTATTATCTTTATTGGTATCGXXXXXXXXXXTTATATTAAAAAA
TGTCCNGAGTAATTCATATTTCATCTAATGAAGAATTAGATAAACATTTGCAAGCTGAAA
GATTAGTGATTGACTTTAGTGCTGCATGGTGTGGTCCATGTAGNGCAATATCTCCGGTAT
TTGAAAAGCTTTCAAACGAATTTGTAACATTTACATTCGTTCATGTTGACATTGATAAAC
TAAGTGGTCATCCAATAGTAAAAGAAATTAGAAGTGTTCCTACATTCTATTTTTACAGAA
ATGGAGCTAAAGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAAGAAGTACTCTAG
AAGCAAACAAATAATTTTTTGTTAAATTAATAATTGTACAAAAAATGCAACAAATTAAAT
AAATAAAAAAAAAAAAATAATTCACAAATTATTTTATTTAATTTAAAAAAAAAAAAAAAA
AAAAAAAAA

ffffffflvkiy*lqfiyilfffdffy**rngcminliksnwhvsl*ti*cgsnfwmrhc
elfefier*ftitini*r*estickdlchfl*kii*iilvdffisli**cfet*npcllk
hl**ftlcnisisiyiicfk**fefffgstft*n**TTNKFLKINSIIFIGI---

---ILKNVXSNSYFI**rir*tfas*kisd*l*ccmvwsm*xnisgi*kafkricniyir
sc*h**tkwssnskrn*kcsyilflqkws*siriqwcq*snskkysrskqiifc*innct
knatn*inkkkkiihklfyli*kkkkkkk

Frame A:
ffffffflvkiy*lqfiyilfffdffy**rngcminliksnwhvsl*ti*cgsnfwmrhc
elfefier*ftitini*r*estickdlchfl*kii*iilvdffisli**cfet*npcllk
hl**ftlcnisisiyiicfk**fefffgstft*n**TTNKFLKINSIIFIGI---

---ly*kmsxvihissneeldkhlqaerlvidfsaawcgpcxaispvfeklsnefvtftf
vhvdidklsghpivkeirsvptfyfyrngakvsefsganeatlrstleank*ffvkliiv
qkmqqik*ikkkk*ftnyfi*fkkkkkkkk

Frame B:
fffffff*lksinynlfiyfffliffinkemvv*li*skvigtslfepfnvavifg*dia
nclnslkdnlpspltskdekapsakicaisseklfksslltsslv*ydnalkpeihac*n
icdnslfviypfpsisyalndnssfssavplhkidkplins*rstvlsllvs---

---yikkcpe*fifhlmkn*inicklkd**ltlvlhgvvhvxqylrylksfqtnl*hlhs
fmltlin*vviq**kklevflhsiftemelkyqnsvvpmkql*evl*kqtnnflln**ly
kkcnklnk*kkknnsqiilfnlkkkkkkkk

Frame C:
fffffffs*nllitiylytfff*ffllikkwlyd*fnqk*larlslnhlmwq*fldetlr
iv*ih*kiiyhhh*hlkmrkhhlqrfvpfplknylnhpc*llh*fdmiml*nlksmlvet
fviihsl*yihfhlyhml*miirvflrqylyiklinh**iledqqyylywy---

---ILKNVXSNSYFI**rir*tfas*kisd*l*ccmvwsm*xnisgi*kafkricniyir
sc*h**tkwssnskrn*kcsyilflqkws*siriqwcq*snskkysrskqiifc*innct
knatn*inkkkkiihklfyli*kkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA674 (SSA674Q) /CSM/SS/SSA6-D/SSA674Q.Seq.d/                       1449   0.0
VSE654 (VSE654Q) /CSM/VS/VSE6-C/VSE654Q.Seq.d/                        868   0.0
VSA720 (VSA720Q) /CSM/VS/VSA7-A/VSA720Q.Seq.d/                        868   0.0
SSK890 (SSK890Q) /CSM/SS/SSK8-D/SSK890Q.Seq.d/                        868   0.0
SSK870 (SSK870Q) /CSM/SS/SSK8-C/SSK870Q.Seq.d/                        868   0.0
SSK738 (SSK738Q) /CSM/SS/SSK7-B/SSK738Q.Seq.d/                        868   0.0
SSK561 (SSK561Q) /CSM/SS/SSK5-C/SSK561Q.Seq.d/                        868   0.0
SSK441 (SSK441Q) /CSM/SS/SSK4-B/SSK441Q.Seq.d/                        868   0.0
SSE854 (SSE854Q) /CSM/SS/SSE8-C/SSE854Q.Seq.d/                        868   0.0
SSE493 (SSE493Q) /CSM/SS/SSE4-D/SSE493Q.Seq.d/                        868   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   686  0.0  5
M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end.   529  e-146  1
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds.   398  e-119  3
M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds.   438  e-119  1
AL157700|AL157700.13 Human DNA sequence from clone RP6-201G10 on chromosome Xq12-13.1.    40  0.25  2
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    34  0.33  10
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    40  0.58  8
AC015514|AC015514.3 Homo sapiens clone RP11-22C22, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.76  3
AL136999|AL136999.26 Human DNA sequence from clone RP11-187E23 on chromosome  13q21.31-21.33.    46  0.81  1
AC141460|AC141460.1 Homo sapiens chromosome 16 clone RP11-488P9, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.81  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P29447) RecName: Full=Thioredoxin-3;          Short=Trx-3;           181   3e-44
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid...   179   2e-43
(P29446) RecName: Full=Thioredoxin-2;          Short=Trx-2; Flag...   177   5e-43
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei...    92   2e-17
FN392322_288(FN392322|pid:none) Pichia pastoris GS115 chromosome...    92   3e-17
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr...    91   4e-17
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m...    90   1e-16
(Q9DGI3) RecName: Full=Thioredoxin;          Short=Trx;  &AF2936...    86   1e-15
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN...    84   7e-15
DQ215312_1(DQ215312|pid:none) Taeniopygia guttata clone 0058P004...    84   9e-15

 psg: 0.99  gvh: 0.39  alm: 0.34  top: 0.47  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSA674 is cyt

>SSA674F.Seq
TTTTTTTTTTTTTTTTTTTTTTTAGTTAAAATCTATTAATTACAATTTATTTATATACTT
TTTTTTTTTGATTTTTTTTATTAATAAAGAAATGGTTGTATGATTAATTTAATCAAAAGT
AATTGGCACGTCTCTCTTTGAACCATTTAATGTGGCAGTAATTTTTGGATGAGACATTGC
GAATTGTTTGAATTCATTGAAAGATAATTTACCATCACCATTAACATCTAAAGATGAGAA
AGCACCATCTGCAAAGATTTGTGCCATTTCCTCTGAAAAATTATTTAAATCATCCTTGTT
GACTTCTTCATTAGTTTGATATGATAATGCTTTGAAACCTGAAATCCATGCTTGTTGAAA
CATTTGTGATAATTCACTCTTTGTAATATATCCATTTCCATCTATATCATATGCTTTAAA
TGATAATTCGAGTTTTTCTTCGGCAGTACCTTTACATAAAATTGATAAACCACTAATAAA
TTCTTGAAGATCAACAGTATTATCTTTATTGGTATCG----------

>SSA674Z.Seq
----------TTATATTAAAAAATGTCCNGAGTAATTCATATTTCATCTAATGAAGAATT
AGATAAACATTTGCAAGCTGAAAGATTAGTGATTGACTTTAGTGCTGCATGGTGTGGTCC
ATGTAGNGCAATATCTCCGGTATTTGAAAAGCTTTCAAACGAATTTGTAACATTTACATT
CGTTCATGTTGACATTGATAAACTAAGTGGTCATCCAATAGTAAAAGAAATTAGAAGTGT
TCCTACATTCTATTTTTACAGAAATGGAGCTAAAGTATCAGAATTCAGTGGTGCCAATGA
AGCAACTCTAAGAAGTACTCTAGAAGCAAACAAATAATTTTTTGTTAAATTAATAATTGT
ACAAAAAATGCAACAAATTAAATAAATAAAAAAAAAAAAATAATTCACAAATTATTTTAT
TTAATTTAAAAAAAAAAAAAAAAAAAAAAAAA

>SSA674P.Seq
TTTTTTTTTTTTTTTTTTTTTTTAGTTAAAATCTATTAATTACAATTTATTTATATACTT
TTTTTTTTTGATTTTTTTTATTAATAAAGAAATGGTTGTATGATTAATTTAATCAAAAGT
AATTGGCACGTCTCTCTTTGAACCATTTAATGTGGCAGTAATTTTTGGATGAGACATTGC
GAATTGTTTGAATTCATTGAAAGATAATTTACCATCACCATTAACATCTAAAGATGAGAA
AGCACCATCTGCAAAGATTTGTGCCATTTCCTCTGAAAAATTATTTAAATCATCCTTGTT
GACTTCTTCATTAGTTTGATATGATAATGCTTTGAAACCTGAAATCCATGCTTGTTGAAA
CATTTGTGATAATTCACTCTTTGTAATATATCCATTTCCATCTATATCATATGCTTTAAA
TGATAATTCGAGTTTTTCTTCGGCAGTACCTTTACATAAAATTGATAAACCACTAATAAA
TTCTTGAAGATCAACAGTATTATCTTTATTGGTATCG----------TTATATTAAAAAA
TGTCCNGAGTAATTCATATTTCATCTAATGAAGAATTAGATAAACATTTGCAAGCTGAAA
GATTAGTGATTGACTTTAGTGCTGCATGGTGTGGTCCATGTAGNGCAATATCTCCGGTAT
TTGAAAAGCTTTCAAACGAATTTGTAACATTTACATTCGTTCATGTTGACATTGATAAAC
TAAGTGGTCATCCAATAGTAAAAGAAATTAGAAGTGTTCCTACATTCTATTTTTACAGAA
ATGGAGCTAAAGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAAGAAGTACTCTAG
AAGCAAACAAATAATTTTTTGTTAAATTAATAATTGTACAAAAAATGCAACAAATTAAAT
AAATAAAAAAAAAAAAATAATTCACAAATTATTTTATTTAATTTAAAAAAAAAAAAAAAA
AAAAAAAAA