>SSA672 (SSA672Q) /CSM/SS/SSA6-C/SSA672Q.Seq.d/
ATTATTTTAAATAGTAAAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCAT
CTCAAGGGTGATGTAAAAGAACATTTTTATGAATTAAAAATTGTAAAAGAAGCTCACAAT
ATGGCATTTAAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGA
GAGGGTAATATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAA
CTCTTTATTGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAAT
GGTGCATCTTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAA
AGATTAAATGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAA
CCTCAAGATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAG
AAATACTATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGAT
GNTCCAAACTCAAATCATTCAAAAAAAAAAAAA

IILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFKKCTVEEGLQLRDLFNG
EGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTIDVNGEEYEISRK
RLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRISELLDN*nqqd
xpnsnhskkkk

Frame A:
IILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFKKCTVEEGLQLRDLFNG
EGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTIDVNGEEYEISRK
RLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRISELLDN*nqqd
xpnsnhskkkk


Frame B:
lf*ivkv*esiiskkkmlfisrvm*knifmn*kl*kkltiwhlknvplkkvyn*eicsme
rviflqphfismrikvnflnslltialkrvlvpfhiwcimvhlhysqlmsmvknmksaek
d*mvcqttskvftqleiclnlkitflvksiqvelfkel*rnticl*nvlvnylttkinkm
xqtqiiqkkk


Frame C:
yfk**kfkkasyqrrrcyssqg*ckrtfl*iknckrssqygi*kmyr*rrftikrfvqwr
g*yfynlisyq*g*k*tfstly*qlh*kgc*crstfgv*wcifithn*cqw*ri*nqqkk
ikwfvklhqkcllnwrfa*tsrshfw*npsk*nfsknfeeilyvyety**it*qlkstrx
sklksfkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                       1104   0.0
SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/                       1104   0.0
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                       1104   0.0
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                       1104   0.0
SSG806 (SSG806Q) /CSM/SS/SSG8-A/SSG806Q.Seq.d/                       1104   0.0
SSG616 (SSG616Q) /CSM/SS/SSG6-A/SSG616Q.Seq.d/                       1104   0.0
SSF809 (SSF809Q) /CSM/SS/SSF8-A/SSF809Q.Seq.d/                       1104   0.0
SSF627 (SSF627Q) /CSM/SS/SSF6-B/SSF627Q.Seq.d/                       1104   0.0
SSA672 (SSA672Q) /CSM/SS/SSA6-C/SSA672Q.Seq.d/                       1104   0.0
SSA306 (SSA306Q) /CSM/SS/SSA3-A/SSA306Q.Seq.d/                       1104   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1104   0.0    1
AC073804|AC073804.1 Mus musculus clone RP23-458N3, WORKING DRAFT SEQUENCE, 105 unordered pieces.    42   4e-04  8
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.004  10
AC020714|AC020714.2 Homo sapiens chromosome 8 clone RP11-446H10, WORKING DRAFT SEQUENCE, 7 unordered pieces.    32   0.011  10
AC023853|AC023853.4 Homo sapiens chromosome 4 clone RP11-110C16 map 4, WORKING DRAFT SEQUENCE, 9 unordered pieces.    40   0.026  8
AC084866|AC084866.5 Homo sapiens chromosome 4 clone RP11-6E9, complete sequence.    38   0.031  6
Z79752|Z79752.2 Caenorhabditis elegans cosmid D2005.               38   0.059  4
AC141958|AC141958.1 Rattus norvegicus clone CH230-499N6, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces.    48   0.13   1
AC141349|AC141349.2 Rattus norvegicus clone CH230-358L15, WORKING DRAFT SEQUENCE, 20 unordered pieces.    48   0.13   1
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    36   0.13   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...   346   2e-94
CP000713_1273(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl...    35   1.1
CP000498_625(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   1.9
AE014187_709(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.5
AY820142_1(AY820142|pid:none) Brassica rapa disease resistance-l...    34   3.2
AL670542_12(AL670542|pid:none) Neurospora crassa DNA linkage gro...    34   3.2
AE017332_42(AE017332|pid:none) Mycoplasma hyopneumoniae 232, com...    33   4.2
AE017244_42(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, co...    33   4.2
AL844509_382(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
CP000235_559(CP000235|pid:none) Anaplasma phagocytophilum HZ, co...    33   5.5

 psg: 0.39  gvh: 0.21  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA672 is nuc

>SSA672E.Seq
ATTATTTTAAATAGTAAAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCAT
CTCAAGGGTGATGTAAAAGAACATTTTTATGAATTAAAAATTGTAAAAGAAGCTCACAAT
ATGGCATTTAAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGA
GAGGGTAATATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAA
CTCTTTATTGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAAT
GGTGCATCTTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAA
AGATTAAATGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAA
CCTCAAGATCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAG
AAATACTATATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGAT
GNTCCAAACTCAAATCATTCAAAAAAAAAAAAA