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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA671
Library SS
(Link to library)
Clone ID SSA671
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11543-1|Contig-U13383-1
Original site URL
Representative seq. ID SSA671P
(Link to Original site)
Representative DNA sequence 
>SSA671 (SSA671Q) /CSM/SS/SSA6-C/SSA671Q.Seq.d/
ATTATTTATTGCAATGATTGCAGCAATATTTATAATTGGATTTATTACCATTTTAAGTTT
TGATGGTGGAATGAATAGAGGAGGTGATAACCCATTACCACAAAAATGGAGAAAAGTTGG
TGTTCAACCAAAGGTTGAAACTACCACTACCACCACCTCCACCTATGTAAATTTACAAAA
TACAGGTAATCAAATAAATCAAGGTAATCAAAATATTGAAGGTGGTGGTCAAGGTACACA
ATATGATAAAAATAGAAGAAAATTACCAAGAATTAAAAAAGGACAGGTTAATCCATTCAA
TAAGATTGATAAAGTTTATAAAGAGAATGAAGATTTAAATAAAAAAAGATCACTTTTGAT
TAGAGAGGAGATGAAATTTAGTTGGGAAAAGTATCGGGGATTTGCATGGGGTTATGATGA
ATTAAAACCAGTGGAGAAGAGAGGTCACGATTGGTTTGGACTTGGTTTAAGTATTGTAGA
TTCATTGGATACACTCTATTTGATGGGTTTGGATAAAGAATATAAAGAAGGAAAAGACTG
GGTTGAGAATGTATTAAATCATAGAAAAGACACTGGTAAAAAGGTGTCAGTATTTGAAAC
CACCATTAGATTCTTGGXXXXXXXXXXCGTTTAACTGGTAATACAGAATATCAAGAAATG
GCTTGGAAAATATTTCAAGCAATCGTTGACGTTTGTAAAACTGAACCTGGTTATGTTGGT
CTTAACGATGTGTCAAATAGTTGGGCATTTCAAGATTTTCAACAAAGTTTCTTTTTGGCT
GAAACACTAAAATACCTTTATTTAACTTTCCAACCATCATCTTTAGTTCCATTAGATAAA
TTTNTTTTTAATACTGAAGCTCANCCAATCGAAATTCAATATAAAGATTAAAAAAAAATA
AAAAATAATAATATCTAATAGATATTTTCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 7.24
Translated Amino Acid sequence 
LFIAMIAAIFIIGFITILSFDGGMNRGGDNPLPQKWRKVGVQPKVETTTTTTSTYVNLQN
TGNQINQGNQNIEGGGQGTQYDKNRRKLPRIKKGQVNPFNKIDKVYKENEDLNKKRSLLI
REEMKFSWEKYRGFAWGYDELKPVEKRGHDWFGLGLSIVDSLDTLYLMGLDKEYKEGKDW
VENVLNHRKDTGKKVSVFETTIRFL---

---RLTGNTEYQEMAWKIFQAIVDVCKTEPGYVGLNDVSNSWAFQDFQQSFFLAETLKYL
YLTFQPSSLVPLDKFXFNTEAXPIEIQYKD*kkiknnni**ifssslkkkkkkkkkkkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
iiycndcsniynwiyyhfkf*wwne*rr**pittkmekswcstkg*nyhyhhlhlckftk
yr*snksr*sky*rwwsryti**k*kkitkn*krtg*siq*d**sl*re*rfk*kkitfd
*rgdei*lgkvsgicmgl**iktsgeersrlvwtwfkycrfigytlfdgfg*ri*rrkrl
g*eciks*krhw*kgvsi*nhh*il---

---RLTGNTEYQEMAWKIFQAIVDVCKTEPGYVGLNDVSNSWAFQDFQQSFFLAETLKYL
YLTFQPSSLVPLDKFXFNTEAXPIEIQYKD*kkiknnni**ifssslkkkkkkkkkkkkk
kk

Frame B:
LFIAMIAAIFIIGFITILSFDGGMNRGGDNPLPQKWRKVGVQPKVETTTTTTSTYVNLQN
TGNQINQGNQNIEGGGQGTQYDKNRRKLPRIKKGQVNPFNKIDKVYKENEDLNKKRSLLI
REEMKFSWEKYRGFAWGYDELKPVEKRGHDWFGLGLSIVDSLDTLYLMGLDKEYKEGKDW
VENVLNHRKDTGKKVSVFETTIRFL---

---v*lviqnikkwlgkyfkqsltfvklnlvmlvltmcqivghfkifnkvsfwlkh*ntf
i*lsnhhl*fh*inxflilklxqskfnikikkk*kiiisnryfhpl*kkkkkkkkkkkkk
k

Frame C:
yllq*lqqyl*ldllpf*vlmve*ieevithyhkngeklvfnqrlklplpppppm*iyki
qvik*ikvikilkvvvkvhnmikieenyqelkkdrlihsirlikfikrmki*ikkdhf*l
err*nlvgksigdlhgvmmn*nqwrrevtigldlv*vl*ihwihsi*wvwiknikkektg
lrmy*iiektlvkrcqylkppldsw---

---fnw*yrisrnglenissnr*rl*n*twlcws*rcvk*lgisrfstkflfg*ntkipl
fnfptiifssir*ixf*y*ssxnrnsi*rlkknkk**ylidifilfkkkkkkkkkkkkkk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA671 (SSA671Q) /CSM/SS/SSA6-C/SSA671Q.Seq.d/                       1602   0.0
SLC501 (SLC501Q) /CSM/SL/SLC5-A/SLC501Q.Seq.d/                         52   2e-05
SLC313 (SLC313Q) /CSM/SL/SLC3-A/SLC313Q.Seq.d/                         52   2e-05
CHR756 (CHR756Q) /CSM/CH/CHR7-C/CHR756Q.Seq.d/                         52   2e-05
AFI117 (AFI117Q) /CSM/AF/AFI1-A/AFI117Q.Seq.d/                         44   0.004
CHE719 (CHE719Q) /CSM/CH/CHE7-A/CHE719Q.Seq.d/                         42   0.016
AHF228 (AHF228Q) /CSM/AH/AHF2-B/AHF228Q.Seq.d/                         42   0.016
AFF719 (AFF719Q) /CSM/AF/AFF7-A/AFF719Q.Seq.d/                         42   0.016
VHO166 (VHO166Q) /CSM/VH/VHO1-C/VHO166Q.Seq.d/                         40   0.063
SHL637 (SHL637Q) /CSM/SH/SHL6-B/SHL637Q.Seq.d/                         40   0.063
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

V00190|V00190.1 Gene for small nuclear RNA D2 of slime mold (D. discoideum).    66  6e-09  2
AC106236|AC106236.5 Rattus norvegicus clone CH230-131J10, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.21  2
BF295868|BF295868.1 029PbD04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    42  0.27  2
AC141862|AC141862.7 Medicago truncatula clone mth2-33n1, WORKING DRAFT SEQUENCE, 30 unordered pieces.    42  0.31  6
AC112342|AC112342.8 Rattus norvegicus clone CH230-253H12, WORKING DRAFT SEQUENCE, 40 unordered pieces.    44  0.35  2
AB010070|AB010070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK20.    46  0.42  2
AL149575|AL149575.1 Anopheles gambiae STS T7 end of clone 19D04 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    46  0.82  1
BF297693|BF297693.1 055PbA03 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    42  1.0  2
BF297934|BF297934.1 058PbC01 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    42  1.1  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40  1.1  9
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006645_1(BC006645|pid:none) Mus musculus mannosidase, alpha, c...    97   6e-19
AL732557_2(AL732557|pid:none) Mouse DNA sequence from clone RP23...    97   6e-19
BC166449_1(BC166449|pid:none) Rattus norvegicus mannosidase, alp...    97   6e-19
AC024261_3(AC024261|pid:none) Arabidopsis thaliana chromosome 1 ...    97   6e-19
AP000604_20(AP000604|pid:none) Arabidopsis thaliana genomic DNA,...    96   2e-18
AY050776_1(AY050776|pid:none) Arabidopsis thaliana putative mann...    96   2e-18
BT000893_1(BT000893|pid:none) Arabidopsis thaliana clone C104782...    96   2e-18
AF126550_1(AF126550|pid:none) Glycine max mannosyl-oligosacchari...    96   2e-18
CT956057_2(CT956057|pid:none) Zebrafish DNA sequence from clone ...    96   2e-18
AF145732_1(AF145732|pid:none) Homo sapiens endoplasmic reticulum...    94   9e-18
protein update 2009. 6. 8
PSORT 

 psg: 0.99  gvh: 0.52  alm: 0.14  top: 0.47  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSA671 is end
5' end seq. ID SSA671F
5' end seq. 
>SSA671F.Seq
ATTATTTATTGCAATGATTGCAGCAATATTTATAATTGGATTTATTACCATTTTAAGTTT
TGATGGTGGAATGAATAGAGGAGGTGATAACCCATTACCACAAAAATGGAGAAAAGTTGG
TGTTCAACCAAAGGTTGAAACTACCACTACCACCACCTCCACCTATGTAAATTTACAAAA
TACAGGTAATCAAATAAATCAAGGTAATCAAAATATTGAAGGTGGTGGTCAAGGTACACA
ATATGATAAAAATAGAAGAAAATTACCAAGAATTAAAAAAGGACAGGTTAATCCATTCAA
TAAGATTGATAAAGTTTATAAAGAGAATGAAGATTTAAATAAAAAAAGATCACTTTTGAT
TAGAGAGGAGATGAAATTTAGTTGGGAAAAGTATCGGGGATTTGCATGGGGTTATGATGA
ATTAAAACCAGTGGAGAAGAGAGGTCACGATTGGTTTGGACTTGGTTTAAGTATTGTAGA
TTCATTGGATACACTCTATTTGATGGGTTTGGATAAAGAATATAAAGAAGGAAAAGACTG
GGTTGAGAATGTATTAAATCATAGAAAAGACACTGGTAAAAAGGTGTCAGTATTTGAAAC
CACCATTAGATTCTTGG----------
Length of 5' end seq. 617
3' end seq. ID SSA671Z
3' end seq. 
>SSA671Z.Seq
----------CGTTTAACTGGTAATACAGAATATCAAGAAATGGCTTGGAAAATATTTCA
AGCAATCGTTGACGTTTGTAAAACTGAACCTGGTTATGTTGGTCTTAACGATGTGTCAAA
TAGTTGGGCATTTCAAGATTTTCAACAAAGTTTCTTTTTGGCTGAAACACTAAAATACCT
TTATTTAACTTTCCAACCATCATCTTTAGTTCCATTAGATAAATTTNTTTTTAATACTGA
AGCTCANCCAATCGAAATTCAATATAAAGATTAAAAAAAAATAAAAAATAATAATATCTA
ATAGATATTTTCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
Length of 3' end seq. 357
Connected seq. ID SSA671P
Connected seq. 
>SSA671P.Seq
ATTATTTATTGCAATGATTGCAGCAATATTTATAATTGGATTTATTACCATTTTAAGTTT
TGATGGTGGAATGAATAGAGGAGGTGATAACCCATTACCACAAAAATGGAGAAAAGTTGG
TGTTCAACCAAAGGTTGAAACTACCACTACCACCACCTCCACCTATGTAAATTTACAAAA
TACAGGTAATCAAATAAATCAAGGTAATCAAAATATTGAAGGTGGTGGTCAAGGTACACA
ATATGATAAAAATAGAAGAAAATTACCAAGAATTAAAAAAGGACAGGTTAATCCATTCAA
TAAGATTGATAAAGTTTATAAAGAGAATGAAGATTTAAATAAAAAAAGATCACTTTTGAT
TAGAGAGGAGATGAAATTTAGTTGGGAAAAGTATCGGGGATTTGCATGGGGTTATGATGA
ATTAAAACCAGTGGAGAAGAGAGGTCACGATTGGTTTGGACTTGGTTTAAGTATTGTAGA
TTCATTGGATACACTCTATTTGATGGGTTTGGATAAAGAATATAAAGAAGGAAAAGACTG
GGTTGAGAATGTATTAAATCATAGAAAAGACACTGGTAAAAAGGTGTCAGTATTTGAAAC
CACCATTAGATTCTTGG----------CGTTTAACTGGTAATACAGAATATCAAGAAATG
GCTTGGAAAATATTTCAAGCAATCGTTGACGTTTGTAAAACTGAACCTGGTTATGTTGGT
CTTAACGATGTGTCAAATAGTTGGGCATTTCAAGATTTTCAACAAAGTTTCTTTTTGGCT
GAAACACTAAAATACCTTTATTTAACTTTCCAACCATCATCTTTAGTTCCATTAGATAAA
TTTNTTTTTAATACTGAAGCTCANCCAATCGAAATTCAATATAAAGATTAAAAAAAAATA
AAAAATAATAATATCTAATAGATATTTTCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 974
Full length Seq ID -
Full length Seq. -
Length of full length seq. -