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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK694
Library AF
(Link to library)
Clone ID AFK694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AFK694Z
(Link to Original site)
Representative DNA sequence 
>AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/
XXXXXXXXXXTGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACAT
TGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAA
AGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAAT
CCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTC
ATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAA
AAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAA
ATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATA
GAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAAC
AAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTAT
TAGATCAACTCTATGATGAACAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAA
ATATTCAAACATGAACAACANATCCAAGAACAACAAGATAAATTNAATCAAGAAAAANAT
CAACAATTANTAGAACAAGAACAAANTCAAAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---GNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKS
YGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQREN
QDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLL
DQLYDEQQQSPDQIKNQLKNIQT*ttxprttr*ixsrkxstixrtrtxski
Translated Amino Acid sequence (All Frames) 
Frame A:
---GNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKS
YGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQREN
QDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLL
DQLYDEQQQSPDQIKNQLKNIQT*ttxprttr*ixsrkxstixrtrtxski


Frame B:
---vmviplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinp
tvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvki
kilvnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*iykkiknnmnfy*
insmmnnnnlltklkin*kifkheqxiqeqqdkxnqekxqqlxeqeqxqk*


Frame C:
---*w*fp**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i*l*stih**il
rfnsitr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ks
rywstksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieftrrsrti*tfir
stl**tttis*pn*ksikkysnmnnxsknnkinxikkxinnx*nknkxkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1330   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1275   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1108   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1108   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1108   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1102   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1102   0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1076   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1074   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                       1066   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1108   0.0    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   7e-09  19
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   3e-08  20
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   2e-07  18
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   3e-07  16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   1e-06  15
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   9e-06  17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   1e-05  16
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   4e-05  25
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42   8e-05  8
dna update 2004. 8. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   319   5e-86
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   8e-05
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   7e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   9e-04
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.002
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    45   0.003
protein update 2009. 4.24
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for AFK694 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFK694Z
3' end seq. 
>AFK694Z.Seq
----------TGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACAT
TGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAA
AGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAAT
CCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTC
ATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAA
AAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAA
ATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTACAAAATA
GAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAAC
AAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTAT
TAGATCAACTCTATGATGAACAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAA
ATATTCAAACATGAACAACANATCCAAGAACAACAAGATAAATTNAATCAAGAAAAANAT
CAACAATTANTAGAACAAGAACAAANTCAAAAATAA
Length of 3' end seq. 686
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -